8J5V image
Deposition Date 2023-04-24
Release Date 2024-05-01
Last Version Date 2025-12-10
Entry Detail
PDB ID:
8J5V
Keywords:
Title:
Crystal structure of estZF172 as a novel biocatalyst for the efficient biosynthesis of a chiral intermediate of pregabalin
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.05 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Carboxylesterase
Gene (Uniprot):estC
Chain IDs:A
Chain Length:404
Number of Molecules:1
Biological Source:Pseudomonas putida
Primary Citation
Crystal Structure of EstZF172 Catalyzing Stereoselectively ( R )‐CNDE in Pregabalin Biosynthesis.
Acs Omega 10 21693 21700 (2025)
PMID: 40488026 DOI: 10.1021/acsomega.5c01054

Abstact

Pregabalin has garnered extensive clinical application for the management of neuropathic pain and epilepsy owing to its high efficacy and broad drug concentration range. EstZF172 is a key enzyme in the biosynthesis of pregabalin, capable of stereoselectively catalyzing the production of (R)-CCMA from the key intermediate rac-CNDE. The novel crystal structure of EstZF172 indicates that it contains a highly conserved Ser-Lys-Tyr catalytic triad and belongs to the family VIII2 carboxylesterases. Molecular docking demonstrates that the steric hindrance presented by residues I159 and F239 plays a crucial role in influencing the binding affinity of the chiral substrate (R)-CNDE for the catalytic site. The study provides a structural basis and reference for the stereoselective catalysis of EstZF172 and engineering modification of the key enzyme in the synthesis of pregabalin.

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Primary Citation of related structures
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