8J5K image
Deposition Date 2023-04-23
Release Date 2023-12-20
Last Version Date 2023-12-20
Entry Detail
PDB ID:
8J5K
Keywords:
Title:
Structural insights into photosystem II supercomplex and trimeric FCP antennae of a centric diatom Cyclotella meneghiniana
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.93 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:FCPII-J, fucoxanthin chlorophyll a/c binding protein
Chain IDs:XA (auth: 3), AB (auth: 8)
Chain Length:163
Number of Molecules:2
Biological Source:Stephanocyclus meneghinianus
Polymer Type:polypeptide(L)
Molecule:FCPII-K, fucoxanthin chlorophyll a/c binding protein
Chain IDs:WA (auth: 4), ZA (auth: 9)
Chain Length:153
Number of Molecules:2
Biological Source:Stephanocyclus meneghinianus
Polymer Type:polypeptide(L)
Molecule:FCPII-G, fucoxanthin chlorophyll a/c binding protein
Chain IDs:SA (auth: 5), BB (auth: 0)
Chain Length:169
Number of Molecules:2
Biological Source:Stephanocyclus meneghinianus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:FCPII-H1, fucoxanthin chlorophyll a/c binding protein
Chain IDs:UA (auth: 6), DB (auth: 1)
Chain Length:164
Number of Molecules:2
Biological Source:Stephanocyclus meneghinianus
Polymer Type:polypeptide(L)
Molecule:FCPII-H2, fucoxanthin chlorophyll a/c binding protein
Chain IDs:TA (auth: 7), CB (auth: 2)
Chain Length:164
Number of Molecules:2
Biological Source:Stephanocyclus meneghinianus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsbA
Chain IDs:A, W (auth: a)
Chain Length:333
Number of Molecules:2
Biological Source:Stephanocyclus meneghinianus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsbB
Chain IDs:B, X (auth: b)
Chain Length:481
Number of Molecules:2
Biological Source:Stephanocyclus meneghinianus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsbC
Chain IDs:C, Y (auth: c)
Chain Length:450
Number of Molecules:2
Biological Source:Stephanocyclus meneghinianus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsbD
Chain IDs:D, Z (auth: d)
Chain Length:340
Number of Molecules:2
Biological Source:Stephanocyclus meneghinianus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsbE
Chain IDs:E, AA (auth: e)
Chain Length:75
Number of Molecules:2
Biological Source:Stephanocyclus meneghinianus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsbF
Chain IDs:F, BA (auth: f)
Chain Length:31
Number of Molecules:2
Biological Source:Stephanocyclus meneghinianus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsbH
Chain IDs:G (auth: H), CA (auth: h)
Chain Length:65
Number of Molecules:2
Biological Source:Stephanocyclus meneghinianus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsbI
Chain IDs:H (auth: I), DA (auth: i)
Chain Length:34
Number of Molecules:2
Biological Source:Stephanocyclus meneghinianus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsbJ
Chain IDs:I (auth: J), EA (auth: j)
Chain Length:34
Number of Molecules:2
Biological Source:Stephanocyclus meneghinianus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsbK
Chain IDs:J (auth: K), FA (auth: k)
Chain Length:37
Number of Molecules:2
Biological Source:Stephanocyclus meneghinianus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsbL
Chain IDs:K (auth: L), GA (auth: l)
Chain Length:37
Number of Molecules:2
Biological Source:Stephanocyclus meneghinianus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsbM
Chain IDs:L (auth: M), HA (auth: m)
Chain Length:41
Number of Molecules:2
Biological Source:Stephanocyclus meneghinianus
Polymer Type:polypeptide(L)
Molecule:Psb34
Chain IDs:M (auth: N), IA (auth: n)
Chain Length:30
Number of Molecules:2
Biological Source:Stephanocyclus meneghinianus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsbO
Chain IDs:N (auth: O), JA (auth: o)
Chain Length:248
Number of Molecules:2
Biological Source:Stephanocyclus meneghinianus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsbQ'
Chain IDs:O (auth: Q), KA (auth: q)
Chain Length:145
Number of Molecules:2
Biological Source:Stephanocyclus meneghinianus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsbT
Chain IDs:P (auth: T), LA (auth: t)
Chain Length:29
Number of Molecules:2
Biological Source:Stephanocyclus meneghinianus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsbU
Chain IDs:Q (auth: U), MA (auth: u)
Chain Length:92
Number of Molecules:2
Biological Source:Stephanocyclus meneghinianus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsbV
Chain IDs:R (auth: V), NA (auth: v)
Chain Length:136
Number of Molecules:2
Biological Source:Stephanocyclus meneghinianus
Polymer Type:polypeptide(L)
Molecule:PsbW
Chain IDs:S (auth: W), OA (auth: w)
Chain Length:50
Number of Molecules:2
Biological Source:Stephanocyclus meneghinianus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsbX
Chain IDs:T (auth: X), PA (auth: x)
Chain Length:34
Number of Molecules:2
Biological Source:Stephanocyclus meneghinianus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsbY
Chain IDs:U (auth: Y), QA (auth: y)
Chain Length:33
Number of Molecules:2
Biological Source:Stephanocyclus meneghinianus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsbZ
Chain IDs:V (auth: Z), RA (auth: z)
Chain Length:59
Number of Molecules:2
Biological Source:Stephanocyclus meneghinianus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:FCPII-I, fucoxanthin chlorophyll a/c binding protein
Chain IDs:VA (auth: p), YA (auth: P)
Chain Length:214
Number of Molecules:2
Biological Source:Stephanocyclus meneghinianus
Primary Citation
Structural insights into photosystem II supercomplex and trimeric FCP antennae of a centric diatom Cyclotella meneghiniana.
Nat Commun 14 8164 8164 (2023)
PMID: 38071196 DOI: 10.1038/s41467-023-44055-8

Abstact

Diatoms are dominant marine algae and contribute around a quarter of global primary productivity, the success of which is largely attributed to their photosynthetic capacity aided by specific fucoxanthin chlorophyll-binding proteins (FCPs) to enhance the blue-green light absorption under water. We purified a photosystem II (PSII)-FCPII supercomplex and a trimeric FCP from Cyclotella meneghiniana (Cm) and solved their structures by cryo-electron microscopy (cryo-EM). The structures reveal detailed organizations of monomeric, dimeric and trimeric FCP antennae, as well as distinct assemblies of Lhcx6_1 and dimeric FCPII-H in PSII core. Each Cm-PSII-FCPII monomer contains an Lhcx6_1, an FCP heterodimer and other three FCP monomers, which form an efficient pigment network for harvesting energy. More diadinoxanthins and diatoxanthins are found in FCPs, which may function to quench excess energy. The trimeric FCP contains more chlorophylls c and fucoxanthins. These diversified FCPs and PSII-FCPII provide a structural basis for efficient light energy harvesting, transfer, and dissipation in C. meneghiniana.

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