8J4U image
Deposition Date 2023-04-20
Release Date 2024-01-03
Last Version Date 2024-01-03
Entry Detail
PDB ID:
8J4U
Keywords:
Title:
Structure of HerA-Sir2 complex from Escherichia coli Nezha system
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.97 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:SIR2-like domain-containing protein
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L
Chain Length:415
Number of Molecules:12
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Molecule:Nucleoside triphosphate hydrolase
Chain IDs:M, N, O, P, Q, R
Chain Length:610
Number of Molecules:6
Biological Source:Escherichia coli
Primary Citation
Multiple enzymatic activities of a Sir2-HerA system cooperate for anti-phage defense.
Mol.Cell 83 4600 4613.e6 (2023)
PMID: 38096825 DOI: 10.1016/j.molcel.2023.11.010

Abstact

In response to the persistent exposure to phage infection, bacteria have evolved diverse antiviral defense mechanisms. In this study, we report a bacterial two-component defense system consisting of a Sir2 NADase and a HerA helicase. Cryo-electron microscopy reveals that Sir2 and HerA assemble into a ∼1 MDa supramolecular octadecamer. Unexpectedly, this complex exhibits various enzymatic activities, including ATPase, NADase, helicase, and nuclease, which work together in a sophisticated manner to fulfill the antiphage function. Therefore, we name this defense system "Nezha" after a divine warrior in Chinese mythology who employs multiple weapons to defeat enemies. Our findings demonstrate that Nezha could sense phage infections, self-activate to arrest cell growth, eliminate phage genomes, and subsequently deactivate to allow for cell recovery. Collectively, Nezha represents a paradigm of sophisticated and multifaceted strategies bacteria use to defend against viral infections.

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