8J3O image
Entry Detail
PDB ID:
8J3O
Keywords:
Title:
Formate dehydrogenase wild-type enzyme from Candida dubliniensis complexed with NADH
Biological Source:
PDB Version:
Deposition Date:
2023-04-17
Release Date:
2023-09-20
Method Details:
Experimental Method:
Resolution:
2.65 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Formate dehydrogenase
Chain IDs:A, B, C, D
Chain Length:386
Number of Molecules:4
Biological Source:Candida dubliniensis (strain CD36 / ATCC MYA-646 / CBS 7987 / NCPF 3949 / NRRL Y-17841)
Primary Citation
Engineering a Formate Dehydrogenase for NADPH Regeneration.
Chembiochem 24 e202300390 e202300390 (2023)
PMID: 37455264 DOI: 10.1002/cbic.202300390

Abstact

Nicotinamide adenine dinucleotide (NADH) and nicotinamide adenine dinucleotide phosphate (NADPH) constitute major hydrogen donors for oxidative/reductive bio-transformations. NAD(P)H regeneration systems coupled with formate dehydrogenases (FDHs) represent a dreamful method. However, most of the native FDHs are NAD+ -dependent and suffer from insufficient reactivity compared to other enzymatic tools, such as glucose dehydrogenase. An efficient and competitive NADP+ -utilizing FDH necessitates the availability and robustness of NADPH regeneration systems. Herein, we report the engineering of a new FDH from Candida dubliniensis (CdFDH), which showed no strict NAD+ preference by a structure-guided rational/semi-rational design. A combinatorial mutant CdFDH-M4 (D197Q/Y198R/Q199N/A372S/K371T/▵Q375/K167R/H16L/K159R) exhibited 75-fold intensification of catalytic efficiency (kcat /Km). Moreover, CdFDH-M4 has been successfully employed in diverse asymmetric oxidative/reductive processes with cofactor total turnover numbers (TTNs) ranging from 135 to 986, making it potentially useful for NADPH-required biocatalytic transformations.

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