8J2Y image
Entry Detail
PDB ID:
8J2Y
Title:
Acidimicrobiaceae bacterium photocobilins protein, dark state
Biological Source:
PDB Version:
Deposition Date:
2023-04-15
Release Date:
2024-04-10
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:GGDEF domain-containing protein
Chain IDs:A, B
Chain Length:352
Number of Molecules:2
Biological Source:Acidimicrobiaceae bacterium
Primary Citation
Photocobilins integrate B12 and bilin photochemistry for enzyme control.
Nat Commun 15 2740 2740 (2024)
PMID: 38548733 DOI: 10.1038/s41467-024-46995-1

Abstact

Photoreceptor proteins utilise chromophores to sense light and trigger a biological response. The discovery that adenosylcobalamin (or coenzyme B12) can act as a light-sensing chromophore heralded a new field of B12-photobiology. Although microbial genome analysis indicates that photoactive B12-binding domains form part of more complex protein architectures, regulating a range of molecular-cellular functions in response to light, experimental evidence is lacking. Here we identify and characterise a sub-family of multi-centre photoreceptors, termed photocobilins, that use B12 and biliverdin (BV) to sense light across the visible spectrum. Crystal structures reveal close juxtaposition of the B12 and BV chromophores, an arrangement that facilitates optical coupling. Light-triggered conversion of the B12 affects quaternary structure, in turn leading to light-activation of associated enzyme domains. The apparent widespread nature of photocobilins implies involvement in light regulation of a wider array of biochemical processes, and thus expands the scope for B12 photobiology. Their characterisation provides inspiration for the design of broad-spectrum optogenetic tools and next generation bio-photocatalysts.

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