8IZB image
Entry Detail
PDB ID:
8IZB
EMDB ID:
Title:
Lysophosphatidylserine receptor GPR174-Gs complex
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2023-04-06
Release Date:
2023-11-01
Method Details:
Experimental Method:
Resolution:
3.06 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Guanine nucleotide-binding protein G(s) subunit alpha isoforms short
Mutations:K25M,G49D,E50N,L63T,G226A,A249D,S252D,L272D,A366S,I372A,V375I
Chain IDs:A
Chain Length:246
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
Chain IDs:B
Chain Length:376
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
Chain IDs:C
Chain Length:71
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Nanobody35
Chain IDs:D (auth: N)
Chain Length:138
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polypeptide(L)
Description:Probable G-protein coupled receptor 174
Chain IDs:E (auth: R)
Chain Length:568
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structural basis for ligand recognition and signaling of the lysophosphatidylserine receptors GPR34 and GPR174.
Plos Biol. 21 e3002387 e3002387 (2023)
PMID: 38048360 DOI: 10.1371/journal.pbio.3002387

Abstact

Lysophosphatidylserine (LysoPS) is a naturally occurring lipid mediator involved in various physiological and pathological processes especially those related to the immune system. GPR34, GPR174, and P2Y10 have been identified as the receptors for LysoPS, and its analogues have been developed as agonists or antagonists for these receptors. However, the lack of structural information hinders the drug development with novel characteristics, such as nonlipid ligands and allosteric modulators. Here, we determined the structures of human GPR34 and GPR174 in complex with LysoPS and G protein by cryo-EM. Combined with structural analysis and functional studies, we elucidated the lipid-binding modes of these receptors. By structural comparison, we identified the structural features of GPR34 and GPR174 in active state. Taken together, our findings provide insights into ligand recognition and signaling of LysoPS receptors and will facilitate the development of novel therapeutics for related inflammatory diseases and autoimmune diseases.

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