8IYN image
Deposition Date 2023-04-05
Release Date 2024-04-10
Last Version Date 2024-12-18
Entry Detail
PDB ID:
8IYN
Keywords:
Title:
Crystal structure of LOV1 D33N mutant of phototropin from Klebsormidium nitens
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.08 Å
R-Value Free:
0.21
R-Value Work:
0.16
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Phototropin
Gene (Uniprot):KFL_000480260
Mutations:D33N
Chain IDs:A
Chain Length:153
Number of Molecules:1
Biological Source:Klebsormidium nitens
Ligand Molecules
Primary Citation
Unusual photodynamic characteristics of the light-oxygen-voltage domain of phototropin linked to terrestrial adaptation of Klebsormidium nitens.
Febs J. 291 5156 5176 (2024)
PMID: 39344087 DOI: 10.1111/febs.17284

Abstact

Phototropin (Phot), a blue light-sensing LOV domain protein, mediates blue light responses and is evolutionarily conserved across the green lineage. Klebsormidium nitens, a green terrestrial alga, presents a valuable opportunity to study adaptive responses from aquatic to land habitat transitions. We determined the crystal structure of Klebsormidium nitens Phot LOV1 domain (KnLOV1) in the dark and engineered different mutations (R60K, Q122N, and D33N) to modulate the lifetime of the photorecovery cycle. We observed unusual, slow recovery kinetics in the wild-type KnLOV1 domain (τ = 41 ± 3 min) compared to different mutants (R60K: τ = 2.0 ± 0.1 min, Q122N: τ = 1.7 ± 0.1 min, D33N: τ = 9.6 ± 0.1 min). Crystal structures of wild-type KnLOV1 and mutants revealed subtle but critical changes near the protein chromophore that is responsible for modulating protein dark recovery time. Our findings shed light on the unique structural and biochemical characteristics of the newly studied KnLOV1 and its evolutionary importance for phototropin-mediated physiology.

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