8IX3 image
Deposition Date 2023-03-31
Release Date 2023-11-15
Last Version Date 2024-11-20
Entry Detail
PDB ID:
8IX3
Title:
Cryo-EM structure of SARS-CoV-2 BA.4/5 spike protein in complex with 1G11 (local refinement)
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.98 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:BA.4/5 variant spike protein
Gene (Uniprot):S
Chain IDs:C (auth: G)
Chain Length:213
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2
Polymer Type:polypeptide(L)
Molecule:heavy chain of 1G11
Chain IDs:B (auth: H)
Chain Length:125
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:light chain of 1G11
Chain IDs:A (auth: L)
Chain Length:107
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural basis for broad neutralization of human antibody against Omicron sublineages and evasion by XBB variant.
J.Virol. 97 e0113723 e0113723 (2023)
PMID: 37855619 DOI: 10.1128/jvi.01137-23

Abstact

The ongoing COVID-19 pandemic has been characterized by the emergence of new SARS-CoV-2 variants including the highly transmissible Omicron XBB sublineages, which have shown significant resistance to neutralizing antibodies (nAbs). This resistance has led to decreased vaccine effectiveness and therefore result in breakthrough infections and reinfections, which continuously threaten public health. To date, almost all available therapeutic nAbs, including those authorized under Emergency Use Authorization nAbs that were previously clinically useful against early strains, have recently been found to be ineffective against newly emerging variants. In this study, we provide a comprehensive structural basis about how the Class 3 nAbs, including 1G11 in this study and noted LY-CoV1404, are evaded by the newly emerged SARS-CoV-2 variants.

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Primary Citation of related structures
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