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8IVP image
Deposition Date 2023-03-28
Release Date 2024-01-24
Last Version Date 2025-08-06
Entry Detail
PDB ID:
8IVP
Keywords:
Title:
Crystal structure of MV in complex with LLP and FRU from Mycobacterium vanbaalenii
Method Details:
Experimental Method:
Resolution:
1.93 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase
Gene (Uniprot):Mvan_4516
Chain IDs:A, B, C, D
Chain Length:337
Number of Molecules:4
Biological Source:Mycolicibacterium vanbaalenii (strain DSM 7251 / JCM 13017 / BCRC 16820 / KCTC 9966 / NRRL B-24157 / PYR-1)
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
LLP A LYS modified residue
Ligand Molecules
Primary Citation
Protein engineering of transaminase facilitating enzyme cascade reaction for the biosynthesis of azasugars.
Iscience 27 109034 109034 (2024)
PMID: 38433920 DOI: 10.1016/j.isci.2024.109034

Abstact

Azasugars, such as 1-deoxynojirimycin (1-DNJ), exhibit unique physiological functions and hold promising applications in medicine and health fields. However, the biosynthesis of 1-DNJ is hindered by the low activity and thermostability of the transaminase. In this study, the transaminase from Mycobacterium vanbaalenii (MvTA) with activity toward d-fructose was engineered through semi-rational design and high-throughput screening method. The final mutant M9-1 demonstrated a remarkable 31.2-fold increase in specific activity and an impressive 200-fold improvement in thermostability compared to the wild-type enzyme. Molecular dynamics (MD) simulations revealed that the mutation sites of H69R and K145R in M9-1 played crucial roles in the binding of the amino acceptor and donor, leading to the stable conformation of substrates within the active pocket. An enzyme cascade reaction was developed using M9-1 and the dehydrogenase from Paenibacillus polymyxa (GutB1) for the production of mannojirimycin (MJ), which provided a new idea for the in vitro biosynthesis of 1-DNJ.

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Chemical

Disease

Primary Citation of related structures
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