8IRK image
Deposition Date 2023-03-18
Release Date 2024-03-06
Last Version Date 2024-09-18
Entry Detail
PDB ID:
8IRK
Keywords:
Title:
Carbon Sulfoxide lyase
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.35 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Probable hercynylcysteine sulfoxide lyase
Gene (Uniprot):egtE
Chain IDs:A, B, C, D
Chain Length:392
Number of Molecules:4
Biological Source:Mycolicibacterium smegmatis MC2 155
Primary Citation
Structure of mycobacterial ergothioneine-biosynthesis C-S lyase EgtE.
J.Biol.Chem. 300 105539 105539 (2024)
PMID: 38072054 DOI: 10.1016/j.jbc.2023.105539

Abstact

L-ergothioneine is widely distributed among various microbes to regulate their physiology and pathogenicity within complex environments. One of the key steps in the ergothioneine-biosynthesis pathway, the C-S bond cleavage reaction, uses the pyridoxal 5'-phosphate dependent C-S lyase to produce the final product L-ergothioneine. Here, we present the crystallographic structure of the ergothioneine-biosynthesis C-S lyase EgtE from Mycobacterium smegmatis (MsEgtE) represents the first published structure of ergothioneine-biosynthesis C-S lyases in bacteria and shows the effects of active site residues on the enzymatic reaction. The MsEgtE and the previously reported ergothioneine-biosynthesis C-S lyase Egt2 from Neurospora crassa (NcEgt2) fold similarly. However, discrepancies arise in terms of substrate recognition, as observed through sequence and structure comparison of MsEgtE and NcEgt2. The structural-based sequence alignment of the ergothioneine-biosynthesis C-S lyase from fungi and bacteria shows clear distinctions among the recognized substrate residues, but Arg348 is critical and an extremely conserved residue for substrate recognition. The α14 helix is exclusively found in the bacteria EgtE, which represent the most significant difference between bacteria EgtE and fungi Egt2, possibly resulting from the convergent evolution of bacteria and fungi.

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