8IPC image
Entry Detail
PDB ID:
8IPC
Title:
The recombinant NZ-1 Fab complexed with the PDZ tandem fragment of A. aeolicus S2P homolog with the PA14 tag inserted between the residues 181 and 184
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2023-03-14
Release Date:
2024-01-31
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.26
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Putative zinc metalloprotease aq_1964
Chain IDs:C (auth: A)
Chain Length:192
Number of Molecules:1
Biological Source:Aquifex aeolicus VF5
Polymer Type:polypeptide(L)
Description:The recombinantly-expressed heavy chain of the monoclonal antibody NZ-1
Chain IDs:A (auth: H)
Chain Length:221
Number of Molecules:1
Biological Source:Rattus norvegicus
Polymer Type:polypeptide(L)
Description:The recombinantly-expressed light chain of the monoclonal antibody NZ-1
Chain IDs:B (auth: L)
Chain Length:214
Number of Molecules:1
Biological Source:Rattus norvegicus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SNN C ASN modified residue
Primary Citation
Recombinant production of antibody antigen-binding fragments with an N-terminal human growth hormone tag in mammalian cells.
Protein Expr.Purif. 208-209 106289 106289 (2023)
PMID: 37160213 DOI: 10.1016/j.pep.2023.106289

Abstact

Antigen-binding fragments (Fabs) of antibodies are both key biopharmaceuticals and valuable tools for basic life science. To streamline the production of diverse Fabs by capitalizing on standard and highly optimized protein production protocols, we here explore a method to prepare recombinant Fabs as secreted fusion proteins with an N-terminal human growth hormone domain and an octa-histidine tag. These tagged Fabs can be purified with standard immobilized metal chelate affinity chromatography. We first demonstrated Fab overproduction using the rat monoclonal antibody NZ-1. Optimization of linker residues enabled the complete removal of the tags by TEV protease, leaving only two additional residues at the N-terminus of the heavy chain. We purified NZ-1 Fab at ∼4 μg/mL of culture supernatant and further confirmed that the NZ-1 Fab from the fusion protein maintained its native fold and binding affinity for target cell-surface antigens. We also showed that several other Fabs of mouse IgG1s, the major subclass in mice, could be produced with the same procedure. Our preparation method can provide greater flexibility in functional and structural modifications of target Fabs because specialized purification techniques are not necessary.

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