8IN1 image
Deposition Date 2023-03-08
Release Date 2023-11-15
Last Version Date 2024-11-20
Entry Detail
PDB ID:
8IN1
Keywords:
Title:
beta-glucosidase protein from Aplysia kurodai
Biological Source:
Source Organism:
Aplysia kurodai (Taxon ID: 6501)
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 62
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Beta-Glucosidase
Gene (Uniprot):ApBGL
Chain IDs:A, B
Chain Length:994
Number of Molecules:2
Biological Source:Aplysia kurodai
Ligand Molecules
Primary Citation
Structural basis of EHEP-mediated offense against phlorotannin-induced defense from brown algae to protect aku BGL activity.
Elife 12 ? ? (2023)
PMID: 37910430 DOI: 10.7554/eLife.88939

Abstact

The defensive-offensive associations between algae and herbivores determine marine ecology. Brown algae utilize phlorotannin as their chemical defense against the predator Aplysia kurodai, which uses β-glucosidase (akuBGL) to digest the laminarin in algae into glucose. Moreover, A. kurodai employs Eisenia hydrolysis-enhancing protein (EHEP) as an offense to protect akuBGL activity from phlorotannin inhibition by precipitating phlorotannin. To underpin the molecular mechanism of this digestive-defensive-offensive system, we determined the structures of the apo and tannic acid (TNA, a phlorotannin analog) bound forms of EHEP, as well as the apo akuBGL. EHEP consisted of three peritrophin-A domains arranged in a triangular shape and bound TNA in the center without significant conformational changes. Structural comparison between EHEP and EHEP-TNA led us to find that EHEP can be resolubilized from phlorotannin precipitation at an alkaline pH, which reflects a requirement in the digestive tract. akuBGL contained two GH1 domains, only one of which conserved the active site. Combining docking analysis, we propose the mechanisms by which phlorotannin inhibits akuBGL by occupying the substrate-binding pocket, and EHEP protects akuBGL against this inhibition by binding with phlorotannin to free the akuBGL pocket.

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Primary Citation of related structures