8II8 image
Entry Detail
PDB ID:
8II8
Title:
X-ray crystal structure of pink-colored protein from Pleurotus salmoneostramineus in complex with natural chromophore
Biological Source:
PDB Version:
Deposition Date:
2023-02-24
Release Date:
2024-08-14
Method Details:
Experimental Method:
Resolution:
1.25 Å
R-Value Free:
0.16
R-Value Work:
0.13
Space Group:
I 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Chromoprotein
Chain IDs:A
Chain Length:226
Number of Molecules:1
Biological Source:Pleurotus salmoneostramineus
Primary Citation
Crystal Structure of the Native Chromoprotein from Pleurotus salmoneostramineus Provides Insights into the Pigmentation Mechanism.
J.Agric.Food Chem. 72 17626 17632 (2024)
PMID: 39073883 DOI: 10.1021/acs.jafc.4c02951

Abstact

The pink-colored protein from the fungus Pleurotus salmoneostramineus (PsPCP) possesses unusual primary sequences with little resemblance to those of known proteins and exhibits a red color in aqueous solution. To understand the pigmentation mechanism of PsPCP, we elucidated the X-ray crystal structure of the native PsPCP. We identified a highly conjugated polyene ligand 2-dehydro-3-deoxylaetiporic acid A as a chromophore ligand, whose solution exhibits yellow. The crystal structure of PsPCP indicated that the ligand is secured in the central cavity and anchored at both termini by hydrophilic interactions and that surrounding residues show CH-pi and C-H···O hydrogen bondings. Geometrical analyses of the bound ligand demonstrated that the conjugated C-C and C═C bonds exhibit similar bond distances. The result indicated enhanced electron delocalization within the conjugated CC bond system, resulting in a redshift of the chromophore ligand. The computational estimates of the UV-vis spectra support the view that the electron delocalization within the conjugated CC bonds system of the bound ligand, induced by the specific ligand geometry within a limited space of PsPCP cavity, is responsible for the red pigmentation of PsPCP. Thus, we propose that the coloring mechanism of PsPCP, which constrains the geometry of a highly conjugated polyene ligand, is a novel type of pigment chemistry.

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