8IE7 image
Deposition Date 2023-02-15
Release Date 2023-05-24
Last Version Date 2023-10-04
Entry Detail
PDB ID:
8IE7
Keywords:
Title:
Crystal structure of DAPK1 in complex with pterostilbene
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.85 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Death-associated protein kinase 1
Gene (Uniprot):DAPK1
Chain IDs:A
Chain Length:293
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Characterization of the molecular interactions between resveratrol derivatives and death-associated protein kinase 1.
Febs J. 290 4465 4479 (2023)
PMID: 37171222 DOI: 10.1111/febs.16817

Abstact

Death-associated protein kinase 1 (DAPK1), a Ca2+/calmodulin-regulated serine/threonine kinase, regulates cell apoptosis and autophagy and has been implicated in the pathogenesis of Alzheimer's disease (AD). Targeting DAPK1 may be a promising approach for treating AD. In our previous study, we found that a natural polyphenol, resveratrol (1), is a moderate DAPK1 inhibitor. In the present study, we investigated the interactions between natural and synthetic derivatives of 1 and DAPK1. Binding assays including intrinsic fluorescence quenching, protein thermal shift and isothermal titration calorimetry indicated that oxyresveratrol (3), a hydroxylated derivative, and pinostilbene (5), a methoxylated derivative, bind to DAPK1 with comparable affinity to 1. The enzymatic assay showed that 3 more effectively inhibits the intrinsic ATPase activity of DAPK1 compared with 1. Crystallographic analysis revealed that the binding modes of the methoxylated derivatives were different from those of 1 and 3, resulting in a unique interaction. Our results suggest that 3 may be helpful in treating AD and provide a clue for the development of promising DAPK1 inhibitors.

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Primary Citation of related structures