ISDA

Deposition Date 2023-02-13

Release Date 2024-02-28

Last Version Date 2024-10-30

Entry Detail

PDB ID:

8IDM

Keywords:

VIRAL PROTEIN

Title:

Crystal structure of nanobody VHH-227 with nanobody VHH-T71 and MERS-CoV RBD

Biological Source:

Source Organism:

Camelus dromedarius (Taxon ID: 9838)
Middle East respiratory syndrome-related coronavirus (Taxon ID: 1335626)

Host Organism:

Homo sapiens

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

3.59 Å

R-Value Free:

0.27

R-Value Work:

0.25

R-Value Observed:

0.25

Space Group:

P 64 2 2

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Macromolecular Entities

Polymer Type:polypeptide(L)
Molecule:VHH-T71
Chain IDs:B (auth: A)
Chain Length:136
Number of Molecules:1
Biological Source:Camelus dromedarius

Polymer Type:polypeptide(L)
Molecule:VHH-227
Chain IDs:A (auth: B)
Chain Length:135
Number of Molecules:1
Biological Source:Camelus dromedarius

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Spike protein S1
Chain IDs:C (auth: D)
Chain Length:229
Number of Molecules:1
Biological Source:Middle East respiratory syndrome-related coronavirus

UniProt ID:K9N5Q8 Pfam ID:PF09408

Ligand Molecules

NAG

Primary Citation

Structural Definition of a Novel Nanobody Binding Site specifically targeting the MERS-CoV RBD Core-Domain with Neutralizing Capacity

Idoudi, F, Wang, R, Tian, L, Zhang, L, Wang, X.Show

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Primary Citation of related structures