8IC2 image
Entry Detail
PDB ID:
8IC2
EMDB ID:
Title:
Respiratory complex CI:CIII2, type I, PERK -/- mouse under cold temperature
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2023-02-10
Release Date:
2024-09-18
Method Details:
Experimental Method:
Resolution:
6.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:NADH-ubiquinone oxidoreductase chain 3
Chain IDs:A
Chain Length:115
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Cytochrome b-c1 complex subunit 1, mitochondrial
Chain IDs:TA (auth: AA), EB (auth: Aa)
Chain Length:480
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Cytochrome b-c1 complex subunit 2, mitochondrial
Chain IDs:UA (auth: AB), FB (auth: Ab)
Chain Length:453
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Cytochrome b
Chain IDs:VA (auth: AC), GB (auth: Ac)
Chain Length:381
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Cytochrome c1, heme protein, mitochondrial
Chain IDs:WA (auth: AD), HB (auth: Ad)
Chain Length:325
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Cytochrome b-c1 complex subunit Rieske, mitochondrial
Chain IDs:XA (auth: AE), BB (auth: AI), IB (auth: Ae)
Chain Length:274
Number of Molecules:3
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Cytochrome b-c1 complex subunit 7
Chain IDs:YA (auth: AF), JB (auth: Af)
Chain Length:111
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Cytochrome b-c1 complex subunit 8
Chain IDs:ZA (auth: AG), KB (auth: Ag)
Chain Length:82
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Cytochrome b-c1 complex subunit 6, mitochondrial
Chain IDs:AB (auth: AH), LB (auth: Ah)
Chain Length:89
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Cytochrome b-c1 complex subunit 9
Chain IDs:CB (auth: AJ), MB (auth: Aj)
Chain Length:64
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Cytochrome b-c1 complex subunit 10
Chain IDs:DB (auth: AK), NB (auth: Ak)
Chain Length:56
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial
Chain IDs:B
Chain Length:224
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial
Chain IDs:C
Chain Length:263
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial
Chain IDs:D
Chain Length:120
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
Chain IDs:E
Chain Length:248
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
Chain IDs:F
Chain Length:57
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial
Chain IDs:G
Chain Length:151
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH-ubiquinone oxidoreductase chain 1
Chain IDs:H
Chain Length:189
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial
Chain IDs:I
Chain Length:212
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH-ubiquinone oxidoreductase chain 6
Chain IDs:J
Chain Length:105
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH-ubiquinone oxidoreductase chain 4L
Chain IDs:K
Chain Length:104
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH-ubiquinone oxidoreductase chain 5
Chain IDs:L
Chain Length:186
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH-ubiquinone oxidoreductase chain 4
Chain IDs:M
Chain Length:459
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH-ubiquinone oxidoreductase chain 2
Chain IDs:N
Chain Length:345
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial
Chain IDs:O
Chain Length:137
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial
Chain IDs:P
Chain Length:377
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial
Chain IDs:Q
Chain Length:145
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial
Chain IDs:R
Chain Length:113
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
Chain IDs:S
Chain Length:99
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Acyl carrier protein, mitochondrial
Chain IDs:T, U
Chain Length:156
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5
Chain IDs:V
Chain Length:116
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
Chain IDs:W
Chain Length:131
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8
Chain IDs:X
Chain Length:172
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11
Chain IDs:Y
Chain Length:143
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13
Chain IDs:Z
Chain Length:144
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1
Chain IDs:AA (auth: a)
Chain Length:115
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3
Chain IDs:BA (auth: b)
Chain Length:224
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial
Chain IDs:CA (auth: c)
Chain Length:263
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 subunit C2
Chain IDs:DA (auth: d)
Chain Length:120
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] iron-sulfur protein 5
Chain IDs:EA (auth: e)
Chain Length:248
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1
Chain IDs:FA (auth: f)
Chain Length:57
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial
Chain IDs:GA (auth: g)
Chain Length:151
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial
Chain IDs:HA (auth: h)
Chain Length:189
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6
Chain IDs:IA (auth: i)
Chain Length:212
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial
Chain IDs:JA (auth: j)
Chain Length:105
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3
Chain IDs:KA (auth: k)
Chain Length:104
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial
Chain IDs:LA (auth: l)
Chain Length:186
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4
Chain IDs:MA (auth: m)
Chain Length:459
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
Chain IDs:NA (auth: n)
Chain Length:345
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7
Chain IDs:OA (auth: o)
Chain Length:137
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10
Chain IDs:PA (auth: p)
Chain Length:377
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
Chain IDs:QA (auth: q)
Chain Length:145
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7
Chain IDs:RA (auth: r)
Chain Length:113
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial
Chain IDs:SA (auth: s)
Chain Length:99
Number of Molecules:1
Biological Source:Mus musculus
Primary Citation
Structural basis of respiratory complex adaptation to cold temperatures.
Cell 187 6584 ? (2024)
PMID: 39395414 DOI: 10.1016/j.cell.2024.09.029

Abstact

In response to cold, mammals activate brown fat for respiratory-dependent thermogenesis reliant on the electron transport chain. Yet, the structural basis of respiratory complex adaptation upon cold exposure remains elusive. Herein, we combined thermoregulatory physiology and cryoelectron microscopy (cryo-EM) to study endogenous respiratory supercomplexes from mice exposed to different temperatures. A cold-induced conformation of CI:III2 (termed type 2) supercomplex was identified with a ∼25° rotation of CIII2 around its inter-dimer axis, shortening inter-complex Q exchange space, and exhibiting catalytic states that favor electron transfer. Large-scale supercomplex simulations in mitochondrial membranes reveal how lipid-protein arrangements stabilize type 2 complexes to enhance catalytic activity. Together, our cryo-EM studies, multiscale simulations, and biochemical analyses unveil the thermoregulatory mechanisms and dynamics of increased respiratory capacity in brown fat at the structural and energetic level.

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