8IB1 image
Entry Detail
PDB ID:
8IB1
Title:
Structure of the LAH31 Fab bound to an influenza virus HA epitope peptide
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2023-02-09
Release Date:
2023-07-26
Method Details:
Experimental Method:
Resolution:
1.95 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:LAH31 Fab light chain
Chain IDs:A
Chain Length:245
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:LAH31 Fab heavy chain
Chain IDs:B
Chain Length:271
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Hemagglutinin HA2 chain
Chain IDs:C
Chain Length:15
Number of Molecules:1
Biological Source:Influenza A virus
Primary Citation
Structural basis for cross-group recognition of an influenza virus hemagglutinin antibody that targets postfusion stabilized epitope.
Plos Pathog. 19 e1011554 e1011554 (2023)
PMID: 37556494 DOI: 10.1371/journal.ppat.1011554

Abstact

Plasticity of influenza virus hemagglutinin (HA) conformation increases an opportunity to generate conserved non-native epitopes with unknown functionality. Here, we have performed an in-depth analysis of human monoclonal antibodies against a stem-helix region that is occluded in native prefusion yet exposed in postfusion HA. A stem-helix antibody, LAH31, provided IgG Fc-dependent cross-group protection by targeting a stem-helix kinked loop epitope, with a unique structure emerging in the postfusion state. The structural analysis and molecular modeling revealed key contact sites responsible for the epitope specificity and cross-group breadth that relies on somatically mutated light chain. LAH31 was inaccessible to the native prefusion HA expressed on cell surface; however, it bound to the HA structure present on infected cells with functional linkage to the Fc-mediated clearance. Our study uncovers a novel non-native epitope that emerges in the postfusion HA state, highlighting the utility of this epitope for a broadly protective antigen design.

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