8I9D image
Deposition Date 2023-02-06
Release Date 2024-02-07
Last Version Date 2024-10-23
Entry Detail
PDB ID:
8I9D
Keywords:
VIRAL PROTEIN/HYDROLASE
Title:
S-ECD (Omicron XBB.1) in complex with PD of ACE2
Biological Source:
Source Organism:
Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Homo sapiens
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.95 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
8I9D validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein
Gene (Uniprot):S
Mutagens:R682G, R683S, R685S, F817P, A892P, A899P, A942P, K986P, V987P
Chain IDs:A, B, C
Chain Length:1266
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2
UniProt ID:P0DTC2 Pfam ID:PF16451, PF09408, PF19209, PF01601
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Processed angiotensin-converting enzyme 2
Gene (Uniprot):ACE2
Chain IDs:D (auth: F), E (auth: D), F (auth: E)
Chain Length:624
Number of Molecules:3
Biological Source:Homo sapiens
UniProt ID:Q9BYF1 Pfam ID:PF01401 EC:3.4.15.1
Ligand Molecules
NAG
Primary Citation
Cryo-EM structures of SARS-CoV-2 BA.2-derived subvariants spike in complex with ACE2 receptor.
Cell Discov 9 108 108 (2023)
PMID: 37919275 DOI: 10.1038/s41421-023-00607-2
Primary Citation of related structures
8I9D
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