8I4N image
Entry Detail
PDB ID:
8I4N
Keywords:
Title:
Crystal strcuture of 6-phosphogluconate dehydrogenase from Corynebacterium glutamicum
Biological Source:
PDB Version:
Deposition Date:
2023-01-20
Release Date:
2023-07-26
Method Details:
Experimental Method:
Resolution:
2.41 Å
R-Value Free:
0.26
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:6-phosphogluconate dehydrogenase, decarboxylating
Chain IDs:A, B
Chain Length:492
Number of Molecules:2
Biological Source:Corynebacterium glutamicum ATCC 13032
Primary Citation
Crystal Structures of 6-Phosphogluconate Dehydrogenase from Corynebacterium glutamicum.
J Microbiol Biotechnol. 33 1 9 (2023)
PMID: 37417004 DOI: 10.4014/jmb.2305.05002

Abstact

Corynebacterium glutamicum (C. glutamicum) has been considered a very important and meaningful industrial microorganism for the production of amino acids worldwide. To produce amino acids, cells require nicotinamide adenine dinucleotide phosphate (NADPH), which is a biological reducing agent. The pentose phosphate pathway (PPP) can supply NADPH in cells via the 6-phosphogluconate dehydrogenase (6PGD) enzyme, which is an oxidoreductase that converts 6-phosphogluconate (6PG) to ribulose 5-phosphate (Ru5P), to produce NADPH. In this study, we identified the crystal structure of 6PGD_apo and 6PGD_NADP from C. glutamicum ATCC 13032 (Cg6PGD) and reported our biological research based on this structure. We identified the substrate binding site and co-factor binding site of Cg6PGD, which are crucial for understanding this enzyme. Based on the findings of our research, Cg6PGD is expected to be used as a NADPH resource in the food industry and as a drug target in the pharmaceutical industry.

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