8I2N image
Deposition Date 2023-01-14
Release Date 2024-01-31
Last Version Date 2024-08-21
Entry Detail
PDB ID:
8I2N
Keywords:
Title:
The RIPK1 kinase domain in complex with QY7-2B compound
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.29 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Receptor-interacting serine/threonine-protein kinase 1
Gene (Uniprot):RIPK1
Mutations:C34A,C127A,C233A,C240A
Chain IDs:A, B
Chain Length:294
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structure-based development of potent and selective type-II kinase inhibitors of RIPK1.
Acta Pharm Sin B 14 319 334 (2024)
PMID: 38261830 DOI: 10.1016/j.apsb.2023.10.021

Abstact

Receptor-interacting serine/threonine-protein kinase 1 (RIPK1) functions as a key regulator in inflammation and cell death and is involved in mediating a variety of inflammatory or degenerative diseases. A number of allosteric RIPK1 inhibitors (RIPK1i) have been developed, and some of them have already advanced into clinical evaluation. Recently, selective RIPK1i that interact with both the allosteric pocket and the ATP-binding site of RIPK1 have started to emerge. Here, we report the rational development of a new series of type-II RIPK1i based on the rediscovery of a reported but mechanistically atypical RIPK3i. We also describe the structure-guided lead optimization of a potent, selective, and orally bioavailable RIPK1i, 62, which exhibits extraordinary efficacies in mouse models of acute or chronic inflammatory diseases. Collectively, 62 provides a useful tool for evaluating RIPK1 in animal disease models and a promising lead for further drug development.

Legend

Protein

Chemical

Disease

Primary Citation of related structures