8I25 image
Entry Detail
PDB ID:
8I25
Keywords:
Title:
NMR structure of Toxoplasma gondii PDCD5 (trans form)
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-01-14
Release Date:
2024-01-17
Method Details:
Experimental Method:
Conformers Calculated:
100000
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Programmed cell death 5 protein
Chain IDs:A
Chain Length:123
Number of Molecules:1
Biological Source:Toxoplasma gondii GT1
Ligand Molecules
Primary Citation
Proline Isomerization and Molten Globular Property of TgPDCD5 Secreted from Toxoplasma gondii Confers Its Regulation of Heparin Sulfate Binding.
Jacs Au 4 1763 1774 (2024)
PMID: 38818051 DOI: 10.1021/jacsau.3c00577

Abstact

Toxoplasmosis, caused by Toxoplasma gondii, poses risks to vulnerable populations. TgPDCD5, a secreted protein of T. gondii, induces apoptosis through heparan sulfate-mediated endocytosis. The entry mechanism of TgPDCD5 has remained elusive. Here, we present the solution structure of TgPDCD5 as a helical bundle with an extended N-terminal helix, exhibiting molten globule characteristics. NMR perturbation studies reveal heparin/heparan sulfate binding involving the heparan sulfate/heparin proteoglycans-binding motif and the core region, influenced by proline isomerization of P107 residue. The heterogeneous proline recruits a cyclophilin TgCyp18, accelerating interconversion between conformers and regulating heparan/heparin binding. These atomic-level insights elucidate the binary switch's functionality, expose novel heparan sulfate-binding surfaces, and illuminate the unconventional cellular entry of pathogenic TgPDCD5.

Legend

Protein

Chemical

Disease

Primary Citation of related structures