8I1D image
Entry Detail
PDB ID:
8I1D
Keywords:
Title:
Crystal structure of human MTH1(G2K mutant) in complex with 2-oxo-dATP at pH 7.7
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-01-13
Release Date:
2023-03-22
Method Details:
Experimental Method:
Resolution:
1.20 Å
R-Value Free:
0.16
R-Value Work:
0.13
R-Value Observed:
0.13
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:7,8-dihydro-8-oxoguanine triphosphatase
Chain IDs:A, B
Chain Length:156
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition.
Febs Lett. 597 1770 1778 (2023)
PMID: 36914375 DOI: 10.1002/1873-3468.14611

Abstact

Human MutT homolog 1 (MTH1), also known as Nudix-type motif 1 (NUDT1), hydrolyzes 8-oxo-dGTP and 2-oxo-dATP with broad substrate recognition and has attracted attention in anticancer therapeutics. Previous studies on MTH1 have proposed that the exchange of the protonation state between Asp119 and Asp120 is essential for the broad substrate recognition of MTH1. To understand the relationship between protonation states and substrate binding, we determined the crystal structures of MTH1 at pH 7.7-9.7. With increasing pH, MTH1 gradually loses its substrate-binding ability, indicating that Asp119 is deprotonated at pH 8.0-9.1 in 8-oxo-dGTP recognition and Asp120 is deprotonated at pH 8.6-9.7 in 2-oxo-dATP recognition. These results confirm that MTH1 recognizes 8-oxo-dGTP and 2-oxo-dATP by exchanging the protonation state between Asp119 and Asp120 with higher pKa .

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