8I0D image
Deposition Date 2023-01-10
Release Date 2023-09-20
Last Version Date 2024-04-03
Entry Detail
PDB ID:
8I0D
Keywords:
Title:
Sb3GT1 375S/Q377H mutant complex with UDP-Glc
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.43 Å
R-Value Free:
0.18
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glycosyltransferase
Gene (Uniprot):UGT78B4
Mutagens:Q376E
Chain IDs:A
Chain Length:458
Number of Molecules:1
Biological Source:Scutellaria baicalensis
Ligand Molecules
Primary Citation
Insights into the missing apiosylation step in flavonoid apiosides biosynthesis of Leguminosae plants.
Nat Commun 14 6658 6658 (2023)
PMID: 37863881 DOI: 10.1038/s41467-023-42393-1

Abstact

Apiose is a natural pentose containing an unusual branched-chain structure. Apiosides are bioactive natural products widely present in the plant kingdom. However, little is known on the key apiosylation reaction in the biosynthetic pathways of apiosides. In this work, we discover an apiosyltransferase GuApiGT from Glycyrrhiza uralensis. GuApiGT could efficiently catalyze 2″-O-apiosylation of flavonoid glycosides, and exhibits strict selectivity towards UDP-apiose. We further solve the crystal structure of GuApiGT, determine a key sugar-binding motif (RLGSDH) through structural analysis and theoretical calculations, and obtain mutants with altered sugar selectivity through protein engineering. Moreover, we discover 121 candidate apiosyltransferase genes from Leguminosae plants, and identify the functions of 4 enzymes. Finally, we introduce GuApiGT and its upstream genes into Nicotiana benthamiana, and complete de novo biosynthesis of a series of flavonoid apiosides. This work reports an efficient phenolic apiosyltransferase, and reveals mechanisms for its sugar donor selectivity.

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Primary Citation of related structures
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