8HXS image
Entry Detail
PDB ID:
8HXS
Keywords:
Title:
Small_spotted catshark CD8alpha
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-01-05
Release Date:
2023-02-22
Method Details:
Experimental Method:
Resolution:
1.35 Å
R-Value Free:
0.21
R-Value Work:
0.21
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:T-cell surface glycoprotein CD8 alpha chain
Chain IDs:A
Chain Length:100
Number of Molecules:1
Biological Source:Scyliorhinus canicula
Primary Citation
The first crystal structure of CD8 alpha alpha from a cartilaginous fish.
Front Immunol 14 1156219 1156219 (2023)
PMID: 37122697 DOI: 10.3389/fimmu.2023.1156219

Abstact

INTRODUCTION Cartilaginous fishes are the most evolutionary-distant vertebrates from mammals and possess an immunoglobulin (Ig)- and T cell-mediated adaptive immunity. CD8 is the hallmark receptor of cytotoxic T cells and is required for the formation of T cell receptor-major histocompatibility complex (TCR-MHC) class I complexes. METHODS RACE PCR was used to obtain gene sequences. Direct dilution was applied for the refolding of denatured recombinant CD8 protein. Hanging-drop vapor diffusion method was performed for protein crystallization. RESULTS In this study, CD8α and CD8β orthologues (termed ScCD8α and ScCD8β) were identified in small-spotted catshark (Scyliorhinus canicula). Both ScCD8α and ScCD8β possess an extracellular immunoglobulin superfamily (IgSF) V domain as in previously identified CD8 proteins. The genes encoding CD8α and CD8β are tandemly linked in the genomes of all jawed vertebrates studied, suggesting that they were duplicated from a common ancestral gene before the divergence of cartilaginous fishes and other vertebrates. We determined the crystal structure of the ScCD8α ectodomain homodimer at a resolution of 1.35 Å and show that it exhibits the typical topological structure of CD8α from endotherms. As in mammals, the homodimer formation of ScCD8αα relies upon interactions within a hydrophobic core although this differs in position and amino acid composition. Importantly, ScCD8αα shares the canonical cavity required for interaction with peptide-loaded MHC I in mammals. Furthermore, it was found that ScCD8α can co-immunoprecipitate with ScCD8β, indicating that it can form both homodimeric and heterodimeric complexes. CONCLUSION Our results expand the current knowledge of vertebrate CD8 dimerization and the interaction between CD8α with p/MHC I from an evolutionary perspective.

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