8HVS image
Deposition Date 2022-12-27
Release Date 2023-10-25
Last Version Date 2024-05-15
Entry Detail
PDB ID:
8HVS
Keywords:
Title:
Solution Structure of the Antimicrobial Peptide HT-2
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ARG-PHE-LEU-ARG-ARG-ILE-PHE-PHE-PHE-PHE
Chain IDs:A
Chain Length:10
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Design and evaluation of tadpole-like conformational antimicrobial peptides.
Commun Biol 6 1177 1177 (2023)
PMID: 37980400 DOI: 10.1038/s42003-023-05560-0

Abstact

Antimicrobial peptides are promising alternatives to conventional antibiotics. Herein, we report a class of "tadpole-like" peptides consisting of an amphipathic α-helical head and an aromatic tail. A structure-activity relationship (SAR) study of "tadpole-like" temporin-SHf and its analogs revealed that increasing the number of aromatic residues in the tail, introducing Arg to the α-helical head and rearranging the peptide topology dramatically increased antimicrobial activity. Through progressive structural optimization, we obtained two peptides, HT2 and RI-HT2, which exhibited potent antimicrobial activity, no hemolytic activity and cytotoxicity, and no propensity to induce resistance. NMR and molecular dynamics simulations revealed that both peptides indeed adopted "tadpole-like" conformations. Fluorescence experiments and electron microscopy confirmed the membrane targeting mechanisms of the peptides. Our studies not only lead to the discovery of a series of ultrashort peptides with potent broad-spectrum antimicrobial activities, but also provide a new strategy for rational design of novel "tadpole-like" antimicrobial peptides.

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Primary Citation of related structures