8HUB image
Deposition Date 2022-12-23
Release Date 2023-01-18
Last Version Date 2024-05-29
Entry Detail
PDB ID:
8HUB
Keywords:
Title:
AMP deaminase 2 in complex with an inhibitor
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.25 Å
R-Value Free:
0.27
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:AMP deaminase 2
Gene (Uniprot):AMPD2
Chain IDs:A, B, C, D
Chain Length:678
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
The discovery of 3,3-dimethyl-1,2,3,4-tetrahydroquinoxaline-1-carboxamides as AMPD2 inhibitors with a novel mechanism of action.
Bioorg.Med.Chem.Lett. 80 129110 129110 (2023)
PMID: 36563792 DOI: 10.1016/j.bmcl.2022.129110

Abstact

AMP deaminase 2 (AMPD2) has been thought to play an important role in energy homeostasis and immuno-oncology, while selective AMPD2 inhibitors are highly demanded to clarify the physiological function of AMPD2. In this report, we describe selective AMPD2 inhibitors inducing allosteric modulation. Based on hypothesis that compounds that exhibit increased inhibition by preincubation would cause conformational change of the enzyme, starting from HTS hit compound 4, we discovered compound 8 through the SAR study. From X-ray structural information of 8, this chemical series has a novel mechanism of action that changes the substrate pocket to prevent AMP from binding. Further elaboration of compound 8 led to the tool compound 21 which exhibited potent inhibitory activity of AMPD2 in ex vivo evaluation of mouse liver.

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Primary Citation of related structures