8HTU image
Deposition Date 2022-12-21
Release Date 2023-08-02
Last Version Date 2024-10-09
Entry Detail
PDB ID:
8HTU
Keywords:
Title:
Cryo-EM structure of PpPSI-L
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.87 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):LOC112290678
Chain IDs:D (auth: 1), V (auth: 5)
Chain Length:245
Number of Molecules:2
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):PHYPA_025494
Chain IDs:E (auth: 2), W (auth: 6)
Chain Length:273
Number of Molecules:2
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):LOC112278439
Chain IDs:F (auth: 3), X (auth: 7)
Chain Length:323
Number of Molecules:2
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):PHYPA_014361
Chain IDs:G (auth: 4), Y (auth: 8)
Chain Length:270
Number of Molecules:2
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):PHYPA_008049
Chain IDs:Z (auth: 9)
Chain Length:311
Number of Molecules:1
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A1
Gene (Uniprot):psaA
Chain IDs:H (auth: A)
Chain Length:750
Number of Molecules:1
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A2
Gene (Uniprot):psaB
Chain IDs:I (auth: B)
Chain Length:734
Number of Molecules:1
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I iron-sulfur center
Gene (Uniprot):psaC
Chain IDs:J (auth: C)
Chain Length:81
Number of Molecules:1
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit II, chloroplastic
Gene (Uniprot):PHYPA_021401
Chain IDs:K (auth: D)
Chain Length:210
Number of Molecules:1
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit IV, chloroplastic
Gene (Uniprot):PHYPA_029370
Chain IDs:L (auth: E)
Chain Length:132
Number of Molecules:1
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit III
Gene (Uniprot):PHYPA_026994
Chain IDs:M (auth: F)
Chain Length:246
Number of Molecules:1
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit V, chloroplastic
Gene (Uniprot):LOC112292701
Chain IDs:N (auth: G)
Chain Length:155
Number of Molecules:1
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit VI, chloroplastic
Gene (Uniprot):PHYPA_019944
Chain IDs:O (auth: H)
Chain Length:139
Number of Molecules:1
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit VIII
Gene (Uniprot):psaI
Chain IDs:P (auth: I)
Chain Length:36
Number of Molecules:1
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit IX
Gene (Uniprot):psaJ
Chain IDs:Q (auth: J)
Chain Length:41
Number of Molecules:1
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I subunit X
Gene (Uniprot):LOC112280125
Chain IDs:R (auth: K)
Chain Length:132
Number of Molecules:1
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PSI subunit V
Chain IDs:S (auth: L)
Chain Length:223
Number of Molecules:1
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit XII
Gene (Uniprot):psaM
Chain IDs:T (auth: M)
Chain Length:32
Number of Molecules:1
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I subunit O
Chain IDs:U (auth: O)
Chain Length:143
Number of Molecules:1
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):PHYPA_025699
Chain IDs:A (auth: U), B (auth: V), C (auth: W)
Chain Length:265
Number of Molecules:3
Biological Source:Physcomitrium patens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
TPO C THR modified residue
Primary Citation
Structural insights into the assembly and energy transfer of the Lhcb9-dependent photosystem I from moss Physcomitrium patens.
Nat.Plants 9 1347 1358 (2023)
PMID: 37474782 DOI: 10.1038/s41477-023-01463-4

Abstact

In plants and green algae, light-harvesting complexes I and II (LHCI and LHCII) constitute the antennae of photosystem I (PSI), thus effectively increasing the cross-section of the PSI core. The moss Physcomitrium patens (P. patens) represents a well-studied primary land-dwelling photosynthetic autotroph branching from the common ancestor of green algae and land plants at the early stage of evolution. P. patens possesses at least three types of PSI with different antenna sizes. The largest PSI form (PpPSI-L) exhibits a unique organization found neither in flowering plants nor in algae. Its formation is mediated by the P. patens-specific LHC protein, Lhcb9. While previous studies have revealed the overall architecture of PpPSI-L, its assembly details and the relationship between different PpPSI types remain unclear. Here we report the high-resolution structure of PpPSI-L. We identified 14 PSI core subunits, one Lhcb9, one phosphorylated LHCII trimer and eight LHCI monomers arranged as two belts. Our structural analysis established the essential role of Lhcb9 and the phosphorylated LHCII in stabilizing the complex. In addition, our results suggest that PpPSI switches between different types, which share identical modules. This feature may contribute to the dynamic adjustment of the light-harvesting capability of PSI under different light conditions.

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