8HQ6 image
Entry Detail
PDB ID:
8HQ6
Title:
KL2 in complex with CRM1-Ran-RanBP1
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2022-12-13
Release Date:
2023-10-25
Method Details:
Experimental Method:
Resolution:
2.03 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:GTP-binding nuclear protein Ran
Mutations:Q69L, L182A
Chain IDs:A
Chain Length:216
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:YRB1 isoform 1
Chain IDs:B
Chain Length:140
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:CRM1 isoform 1
Mutations:S27E , Q49E, A51V, del377-413, del441-461, D537G, T539C, V540E, K541Q, S553R, Q561E, A741T, Y1022C
Chain IDs:C
Chain Length:1003
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Primary Citation
Discovery of Aminoratjadone Derivatives as Potent Noncovalent CRM1 Inhibitors.
J.Med.Chem. 66 11940 11950 (2023)
PMID: 37595020 DOI: 10.1021/acs.jmedchem.3c00549

Abstact

Cancer cells frequently utilize elevated nuclear export to escape tumor suppression and gain proliferative advantage. Chromosome Region Maintenance 1 (CRM1/XPO1) mediates macromolecule nuclear export and plays an important role in tumorigenesis and progression. The clinical approval of its covalent inhibitor KPT-330 (Selinexor) validates the feasibility of targeting CRM1 to treat cancers. Here, we synthesized four aminoratjadone derivatives and found that two of them, KL1 and KL2, are noncovalent CRM1 inhibitors. The two compounds underwent spontaneous hydrolysis in aqueous buffers, and the resulting products were more active against CRM1. High-resolution crystal structures revealed the CRM1-binding mode of these compounds and explained the observed structure-activity relationships. In cells, KL1 and KL2 localized CRM1 in the nuclear periphery and led to depletion of nuclear CRM1, thereby inhibiting the nuclear export and growth of colorectal cancer cells at submicromolar concentrations. This work lays the foundation for further development of aminoratjadone-based noncovalent CRM1 inhibitors.

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Primary Citation of related structures