8HLF image
Deposition Date 2022-11-30
Release Date 2023-10-04
Last Version Date 2023-12-20
Entry Detail
PDB ID:
8HLF
Keywords:
Title:
Crystal structure of DddK-DMSOP complex
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.62 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Novel protein with potential Cupin domain
Gene (Uniprot):SAR11_0394
Mutations:Y64A
Chain IDs:A, B
Chain Length:136
Number of Molecules:2
Biological Source:Candidatus Pelagibacter ubique HTCC1062
Primary Citation
DMSOP-cleaving enzymes are diverse and widely distributed in marine microorganisms.
Nat Microbiol 8 2326 2337 (2023)
PMID: 38030907 DOI: 10.1038/s41564-023-01526-4

Abstact

Dimethylsulfoxonium propionate (DMSOP) is a recently identified and abundant marine organosulfur compound with roles in oxidative stress protection, global carbon and sulfur cycling and, as shown here, potentially in osmotolerance. Microbial DMSOP cleavage yields dimethyl sulfoxide, a ubiquitous marine metabolite, and acrylate, but the enzymes responsible, and their environmental importance, were unknown. Here we report DMSOP cleavage mechanisms in diverse heterotrophic bacteria, fungi and phototrophic algae not previously known to have this activity, and highlight the unappreciated importance of this process in marine sediment environments. These diverse organisms, including Roseobacter, SAR11 bacteria and Emiliania huxleyi, utilized their dimethylsulfoniopropionate lyase 'Ddd' or 'Alma' enzymes to cleave DMSOP via similar catalytic mechanisms to those for dimethylsulfoniopropionate. Given the annual teragram predictions for DMSOP production and its prevalence in marine sediments, our results highlight that DMSOP cleavage is likely a globally significant process influencing carbon and sulfur fluxes and ecological interactions.

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