8HLB image
Entry Detail
PDB ID:
8HLB
EMDB ID:
Keywords:
Title:
Cryo-EM structure of biparatopic antibody Bp109-92 in complex with TNFR2
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2022-11-29
Release Date:
2023-10-04
Method Details:
Experimental Method:
Resolution:
3.63 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Tumor necrosis factor receptor superfamily member 1B,Maltose/maltodextrin-binding periplasmic protein
Mutations:A490V
Chain IDs:A
Chain Length:550
Number of Molecules:1
Biological Source:Homo sapiens, Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:TR109 heavy chain
Chain IDs:B
Chain Length:236
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:TR109 light chain
Chain IDs:C
Chain Length:218
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:TR92 heavy chain
Chain IDs:D
Chain Length:238
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:TR92 light chain
Chain IDs:E
Chain Length:214
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Development of a 1:1-binding biparatopic anti-TNFR2 antagonist by reducing signaling activity through epitope selection.
Commun Biol 6 987 987 (2023)
PMID: 37758868 DOI: 10.1038/s42003-023-05326-8

Abstact

Conventional bivalent antibodies against cell surface receptors often initiate unwanted signal transduction by crosslinking two antigen molecules. Biparatopic antibodies (BpAbs) bind to two different epitopes on the same antigen, thus altering crosslinking ability. In this study, we develop BpAbs against tumor necrosis factor receptor 2 (TNFR2), which is an attractive immune checkpoint target. Using different pairs of antibody variable regions specific to topographically distinct TNFR2 epitopes, we successfully regulate the size of BpAb-TNFR2 immunocomplexes to result in controlled agonistic activities. Our series of results indicate that the relative positions of the two epitopes recognized by the BpAb are critical for controlling its signaling activity. One particular antagonist, Bp109-92, binds TNFR2 in a 1:1 manner without unwanted signal transduction, and its structural basis is determined using cryo-electron microscopy. This antagonist suppresses the proliferation of regulatory T cells expressing TNFR2. Therefore, the BpAb format would be useful in designing specific and distinct antibody functions.

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Primary Citation of related structures