8HKA image
Deposition Date 2022-11-25
Release Date 2023-06-21
Last Version Date 2024-05-22
Entry Detail
PDB ID:
8HKA
Title:
TPA bound-form of Periplasmic terephthalate binding protein (TBP) from Ideonella sakaiensis
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.02 Å
R-Value Free:
0.22
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Periplasmic terephthalate binding protein (TBP)
Gene (Uniprot):ISF6_0226
Chain IDs:A
Chain Length:308
Number of Molecules:1
Biological Source:Ideonella sakaiensis
Ligand Molecules
Primary Citation
Molecular mechanism underlying high-affinity terephthalate binding and conformational change of TBP from Ideonella sakaiensis.
Int.J.Biol.Macromol. 243 125252 125252 (2023)
PMID: 37295700 DOI: 10.1016/j.ijbiomac.2023.125252

Abstact

Ideonella sakaiensis is the bacterium that can survive by degrading polyethylene terephthalate (PET) plastic, and terephthalic acid (TPA) binding protein (IsTBP) is an essential periplasmic protein for uptake of TPA into the cytosol for complete degradation of PET. Here, we demonstrated that IsTBP has remarkably high specificity for TPA among 33 monophenolic compounds and two 1,6-dicarboxylic acids tested. Structural comparisons with 6-carboxylic acid binding protein (RpAdpC) and TBP from Comamonas sp. E6 (CsTphC) revealed the key structural features that contribute to high TPA specificity and affinity of IsTBP. We also elucidated the molecular mechanism underlying the conformational change upon TPA binding. In addition, we developed the IsTBP variant with enhanced TPA sensitivity, which can be expanded for the use of TBP as a biosensor for PET degradation.

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Primary Citation of related structures