8HI7 image
Entry Detail
PDB ID:
8HI7
Title:
Crystal structure of a holoenzyme TglHI with two Fe irons for Pseudomonas syringae Peptidyl (S) 2-mercaptoglycine biosynthesis
Biological Source:
PDB Version:
Deposition Date:
2022-11-18
Release Date:
2023-08-23
Method Details:
Experimental Method:
Resolution:
3.25 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 61
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:RiPP Recognition protein
Chain IDs:A
Chain Length:269
Number of Molecules:1
Biological Source:Pseudomonas syringae pv. maculicola str. ES4326
Polymer Type:polypeptide(L)
Description:DUF692 family protein
Chain IDs:B
Chain Length:304
Number of Molecules:1
Biological Source:Pseudomonas syringae pv. maculicola str. ES4326
Ligand Molecules
Primary Citation
Structures of the holoenzyme TglHI required for 3-thiaglutamate biosynthesis.
Structure 31 1220 1232.e5 (2023)
PMID: 37652001 DOI: 10.1016/j.str.2023.08.004

Abstact

Structural diverse natural products like ribosomally synthesized and posttranslationally modified peptides (RiPPs) display a wide range of biological activities. Currently, the mechanism of an uncommon reaction step during the biosynthesis of 3-thiaglutamate (3-thiaGlu) is poorly understood. The removal of the β-carbon from the Cys in the TglA-Cys peptide catalyzed by the TglHI holoenzyme remains elusive. Here, we present three crystal structures of TglHI complexes with and without bound iron, which reveal that the catalytic pocket is formed by the interaction of TglH-TglI and that its activation is conformation dependent. Biochemical assays suggest a minimum of two iron ions in the active cluster, and we identify the position of a third iron site. Collectively, our study offers insights into the activation and catalysis mechanisms of the non-heme dioxygen-dependent holoenzyme TglHI. Additionally, it highlights the evolutionary and structural conservation in the DUF692 family of biosynthetic enzymes that produce diverse RiPPs.

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Primary Citation of related structures