8HGN image
Deposition Date 2022-11-15
Release Date 2023-09-27
Last Version Date 2023-09-27
Entry Detail
PDB ID:
8HGN
Keywords:
Title:
Crystal structure of MeaC (Mesaconyl-CoA hydratase)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.95 Å
R-Value Free:
0.27
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 63
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Beta-methylmalyl-CoA dehydratase
Gene (Uniprot):Mchl_4075
Chain IDs:A
Chain Length:356
Number of Molecules:1
Biological Source:Methylorubrum extorquens CM4
Ligand Molecules
Primary Citation
Crystal Structure of Mesaconyl-CoA Hydratase from Methylorubrum extorquens CM4.
J Microbiol Biotechnol. 33 485 492 (2023)
PMID: 36788474 DOI: 10.4014/jmb.2212.12003

Abstact

Methylorubrum extorquens, a facultative methylotroph, assimilates C1 compounds and accumulates poly-β-hydroxylbutyrate (PHB) as carbon and energy sources. The ethylmalonyl pathway is central to the carbon metabolism of M. extorquens, and is linked with a serine cycle and a PHB biosynthesis pathway. Understanding the ethylmalonyl pathway is vital in utilizing methylotrophs to produce value-added chemicals. In this study, we determined the crystal structure of the mesaconyl-CoA hydratase from M. extorquens (MeMeaC) that catalyzes the reversible conversion of mesaconyl-CoA to β-methylmalyl-CoA. The crystal structure of MeMeaC revealed that the enzyme belongs to the MaoC-like dehydratase domain superfamily and functions as a trimer. In our current MeMeaC structure, malic acid occupied the substrate binding site, which reveals how MeMeaC recognizes the β-methylmalyl-moiety of its substrate. The active site of the enzyme was further speculated by comparing its structure with those of other MaoC-like hydratases.

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Chemical

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Primary Citation of related structures
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