8HGK image
Deposition Date 2022-11-14
Release Date 2023-09-27
Last Version Date 2024-04-17
Entry Detail
PDB ID:
8HGK
Keywords:
Title:
Crystal structure of human ClpP in complex with ZK53
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ATP-dependent Clp protease proteolytic subunit, mitochondrial
Gene (Uniprot):CLPP
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L, M, N
Chain Length:222
Number of Molecules:14
Biological Source:Homo sapiens
Primary Citation
Selective activator of human ClpP triggers cell cycle arrest to inhibit lung squamous cell carcinoma.
Nat Commun 14 7069 7069 (2023)
PMID: 37923710 DOI: 10.1038/s41467-023-42784-4

Abstact

Chemo-activation of mitochondrial ClpP exhibits promising anticancer properties. However, we are currently unaware of any studies using selective and potent ClpP activators in lung squamous cell carcinoma. In this work, we report on such an activator, ZK53, which exhibits therapeutic effects on lung squamous cell carcinoma in vivo. The crystal structure of ZK53/ClpP complex reveals a π-π stacking effect that is essential for ligand binding selectively to the mitochondrial ClpP. ZK53 features on a simple scaffold, which is distinct from the activators with rigid scaffolds, such as acyldepsipeptides and imipridones. ZK53 treatment causes a decrease of the electron transport chain in a ClpP-dependent manner, which results in declined oxidative phosphorylation and ATP production in lung tumor cells. Mechanistically, ZK53 inhibits the adenoviral early region 2 binding factor targets and activates the ataxia-telangiectasia mutated-mediated DNA damage response, eventually triggering cell cycle arrest. Lastly, ZK53 exhibits therapeutic effects on lung squamous cell carcinoma cells in xenograft and autochthonous mouse models.

Legend

Protein

Chemical

Disease

Primary Citation of related structures