8HEB image
Entry Detail
PDB ID:
8HEB
EMDB ID:
Title:
SARS-CoV-2 Spike trimer in complex with RmAb 9H1 Fab in the class 1 conformation
Biological Source:
PDB Version:
Deposition Date:
2022-11-08
Release Date:
2023-04-26
Method Details:
Experimental Method:
Resolution:
3.53 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Spike glycoprotein
Mutations:R682G, R683S, R685S, K986P, V987P
Chain IDs:A, B, C
Chain Length:1208
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2
Polymer Type:polypeptide(L)
Description:rabbit antibody 9H1 light chain
Chain IDs:D, F, H
Chain Length:110
Number of Molecules:3
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:rabbit antibody 9H1 heavy chain
Chain IDs:E, G, I
Chain Length:117
Number of Molecules:3
Biological Source:Oryctolagus cuniculus
Ligand Molecules
Primary Citation
Mechanism of an RBM-targeted rabbit monoclonal antibody 9H1 neutralizing SARS-CoV-2.
Biochem.Biophys.Res.Commun. 660 43 49 (2023)
PMID: 37062240 DOI: 10.1016/j.bbrc.2023.04.002

Abstact

The COVID-19 pandemic, caused by SARS-CoV-2, has led to over 750 million infections and 6.8 million deaths worldwide since late 2019. Due to the continuous evolution of SARS-CoV-2, many significant variants have emerged, creating ongoing challenges to the prevention and treatment of the pandemic. Therefore, the study of antibody responses against SARS-CoV-2 is essential for the development of vaccines and therapeutics. Here we perform single particle cryo-electron microscopy (cryo-EM) structure determination of a rabbit monoclonal antibody (RmAb) 9H1 in complex with the SARS-CoV-2 wild-type (WT) spike trimer. Our structural analysis shows that 9H1 interacts with the receptor-binding motif (RBM) region of the receptor-binding domain (RBD) on the spike protein and by directly competing with angiotensin-converting enzyme 2 (ACE2), it blocks the binding of the virus to the receptor and achieves neutralization. Our findings suggest that utilizing rabbit-derived mAbs provides valuable insights into the molecular interactions between neutralizing antibodies and spike proteins and may also facilitate the development of therapeutic antibodies and expand the antibody library.

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Primary Citation of related structures