8HDW image
Deposition Date 2022-11-06
Release Date 2023-01-18
Last Version Date 2024-07-03
Entry Detail
PDB ID:
8HDW
Keywords:
Title:
Cyanophage Pam3 Sheath-tube
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
HELICAL
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:pam3 tube
Chain IDs:A (auth: 1), B (auth: 2), O (auth: Y), P (auth: Z), Q (auth: m), R (auth: n), S (auth: o), T (auth: p), U (auth: q), V (auth: r), W (auth: s), X (auth: t), Y (auth: u), Z (auth: v), AA (auth: w), BA (auth: x), CA (auth: y), DA (auth: z)
Chain Length:142
Number of Molecules:18
Biological Source:uncultured cyanophage
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Pam3 sheath protein
Chain IDs:C (auth: M), D (auth: N), E (auth: O), F (auth: P), G (auth: Q), H (auth: R), I (auth: S), J (auth: T), K (auth: U), L (auth: V), M (auth: W), N (auth: X)
Chain Length:384
Number of Molecules:12
Biological Source:uncultured cyanophage
Ligand Molecules
Primary Citation
Fine structure and assembly pattern of a minimal myophage Pam3.
Proc.Natl.Acad.Sci.USA 120 e2213727120 e2213727120 (2023)
PMID: 36656854 DOI: 10.1073/pnas.2213727120

Abstact

The myophage possesses a contractile tail that penetrates its host cell envelope. Except for investigations on the bacteriophage T4 with a rather complicated structure, the assembly pattern and tail contraction mechanism of myophage remain largely unknown. Here, we present the fine structure of a freshwater Myoviridae cyanophage Pam3, which has an icosahedral capsid of ~680 Å in diameter, connected via a three-section neck to an 840-Å-long contractile tail, ending with a three-module baseplate composed of only six protein components. This simplified baseplate consists of a central hub-spike surrounded by six wedge heterotriplexes, to which twelve tail fibers are covalently attached via disulfide bonds in alternating upward and downward configurations. In vitro reduction assays revealed a putative redox-dependent mechanism of baseplate assembly and tail sheath contraction. These findings establish a minimal myophage that might become a user-friendly chassis phage in synthetic biology.

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Primary Citation of related structures