8HDT image
Deposition Date 2022-11-06
Release Date 2023-01-18
Last Version Date 2024-07-03
Entry Detail
PDB ID:
8HDT
Keywords:
Title:
Cyanophage Pam3 capsid asymmetric unit
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.17 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Major capsid
Chain IDs:A, B, C, D, E, F, N
Chain Length:310
Number of Molecules:7
Biological Source:uncultured cyanophage
Polymer Type:polypeptide(L)
Molecule:Cement
Chain IDs:G, H, I, J, K, L, M
Chain Length:166
Number of Molecules:7
Biological Source:uncultured cyanophage
Ligand Molecules
Primary Citation
Fine structure and assembly pattern of a minimal myophage Pam3.
Proc.Natl.Acad.Sci.USA 120 e2213727120 e2213727120 (2023)
PMID: 36656854 DOI: 10.1073/pnas.2213727120

Abstact

The myophage possesses a contractile tail that penetrates its host cell envelope. Except for investigations on the bacteriophage T4 with a rather complicated structure, the assembly pattern and tail contraction mechanism of myophage remain largely unknown. Here, we present the fine structure of a freshwater Myoviridae cyanophage Pam3, which has an icosahedral capsid of ~680 Å in diameter, connected via a three-section neck to an 840-Å-long contractile tail, ending with a three-module baseplate composed of only six protein components. This simplified baseplate consists of a central hub-spike surrounded by six wedge heterotriplexes, to which twelve tail fibers are covalently attached via disulfide bonds in alternating upward and downward configurations. In vitro reduction assays revealed a putative redox-dependent mechanism of baseplate assembly and tail sheath contraction. These findings establish a minimal myophage that might become a user-friendly chassis phage in synthetic biology.

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Primary Citation of related structures