8HCN image
Deposition Date 2022-11-02
Release Date 2023-05-03
Last Version Date 2024-06-19
Entry Detail
PDB ID:
8HCN
Keywords:
Title:
CryoEM Structure of Klebsiella pneumoniae UreD/urease complex
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Urease subunit gamma
Chain IDs:A, E, I
Chain Length:100
Number of Molecules:3
Biological Source:Klebsiella pneumoniae
Polymer Type:polypeptide(L)
Molecule:Urease subunit beta
Gene (Uniprot):ureB
Chain IDs:B, F, J
Chain Length:106
Number of Molecules:3
Biological Source:Klebsiella pneumoniae
Polymer Type:polypeptide(L)
Molecule:Urease subunit alpha
Gene (Uniprot):ureC
Chain IDs:C, G, K
Chain Length:567
Number of Molecules:3
Biological Source:Klebsiella pneumoniae
Polymer Type:polypeptide(L)
Molecule:Urease accessory protein UreD
Chain IDs:D, H, L
Chain Length:282
Number of Molecules:3
Biological Source:Klebsiella pneumoniae
Ligand Molecules
Primary Citation
Delivering a toxic metal to the active site of urease.
Sci Adv 9 eadf7790 eadf7790 (2023)
PMID: 37083535 DOI: 10.1126/sciadv.adf7790

Abstact

Urease is a nickel (Ni) enzyme that is essential for the colonization of Helicobacter pylori in the human stomach. To solve the problem of delivering the toxic Ni ion to the active site without diffusing into the cytoplasm, cells have evolved metal carrier proteins, or metallochaperones, to deliver the toxic ions to specific protein complexes. Ni delivery requires urease to form an activation complex with the urease accessory proteins UreFD and UreG. Here, we determined the cryo-electron microscopy structures of H. pylori UreFD/urease and Klebsiella pneumoniae UreD/urease complexes at 2.3- and 2.7-angstrom resolutions, respectively. Combining structural, mutagenesis, and biochemical studies, we show that the formation of the activation complex opens a 100-angstrom-long tunnel, where the Ni ion is delivered through UreFD to the active site of urease.

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Primary Citation of related structures