8HAL image
Entry Detail
PDB ID:
8HAL
EMDB ID:
Keywords:
Title:
Cryo-EM structure of the CBP catalytic core bound to the H4K12acK16ac nucleosome, class 1
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2022-10-26
Release Date:
2023-05-17
Method Details:
Experimental Method:
Resolution:
4.40 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Histone H3.1
Chain IDs:A, E
Chain Length:135
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Histone H4
Chain IDs:B, F
Chain Length:102
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Histone H2A type 1-B/E
Chain IDs:C, G
Chain Length:129
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Histone H2B type 1-J
Chain IDs:D, H
Chain Length:125
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Description:DNA (180-mer)
Chain IDs:I, J
Chain Length:180
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:CREB-binding protein
Chain IDs:K
Chain Length:797
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Epigenetic mechanisms to propagate histone acetylation by p300/CBP.
Nat Commun 14 4103 4103 (2023)
PMID: 37460559 DOI: 10.1038/s41467-023-39735-4

Abstact

Histone acetylation is important for the activation of gene transcription but little is known about its direct read/write mechanisms. Here, we report cryogenic electron microscopy structures in which a p300/CREB-binding protein (CBP) multidomain monomer recognizes histone H4 N-terminal tail (NT) acetylation (ac) in a nucleosome and acetylates non-H4 histone NTs within the same nucleosome. p300/CBP not only recognized H4NTac via the bromodomain pocket responsible for reading, but also interacted with the DNA minor grooves via the outside of that pocket. This directed the catalytic center of p300/CBP to one of the non-H4 histone NTs. The primary target that p300 writes by reading H4NTac was H2BNT, and H2BNTac promoted H2A-H2B dissociation from the nucleosome. We propose a model in which p300/CBP replicates histone N-terminal tail acetylation within the H3-H4 tetramer to inherit epigenetic storage, and transcribes it from the H3-H4 tetramer to the H2B-H2A dimers to activate context-dependent gene transcription through local nucleosome destabilization.

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Primary Citation of related structures