8H9Q image
Entry Detail
PDB ID:
8H9Q
EMDB ID:
Title:
Human ATP synthase state 3b subregion 3
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2022-10-25
Release Date:
2023-05-31
Method Details:
Experimental Method:
Resolution:
3.47 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:ATP synthase F(0) complex subunit C1, mitochondrial
Chain IDs:A (auth: 4), B (auth: 5), C (auth: 6), D (auth: 7), E (auth: 8), F (auth: 1), G (auth: 2), H (auth: 3)
Chain Length:75
Number of Molecules:8
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:ATP synthase subunit gamma, mitochondrial
Chain IDs:I (auth: G)
Chain Length:273
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:ATP synthase subunit delta, mitochondrial
Chain IDs:J (auth: H)
Chain Length:146
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:ATP synthase subunit epsilon, mitochondrial
Chain IDs:K (auth: I)
Chain Length:51
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:ATP synthase F(0) complex subunit B1, mitochondrial
Chain IDs:L (auth: K)
Chain Length:214
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:ATP synthase subunit d, mitochondrial
Chain IDs:M
Chain Length:160
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:ATP synthase subunit a
Chain IDs:N
Chain Length:226
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:ATP synthase subunit ATP5MJ, mitochondrial
Chain IDs:O (auth: P)
Chain Length:58
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:ATP synthase protein 8
Chain IDs:P (auth: Q)
Chain Length:68
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:ATP synthase subunit f, mitochondrial
Chain IDs:Q (auth: R)
Chain Length:93
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:ATP synthase subunit g, mitochondrial
Chain IDs:R (auth: S)
Chain Length:102
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:ATP synthase subunit e, mitochondrial
Chain IDs:S (auth: T)
Chain Length:69
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structure of the human ATP synthase.
Mol.Cell 83 2137 ? (2023)
PMID: 37244256 DOI: 10.1016/j.molcel.2023.04.029

Abstact

Biological energy currency ATP is produced by F1Fo-ATP synthase. However, the molecular mechanism for human ATP synthase action remains unknown. Here, we present snapshot images for three main rotational states and one substate of human ATP synthase using cryoelectron microscopy. These structures reveal that the release of ADP occurs when the β subunit of F1Fo-ATP synthase is in the open conformation, showing how ADP binding is coordinated during synthesis. The accommodation of the symmetry mismatch between F1 and Fo motors is resolved by the torsional flexing of the entire complex, especially the γ subunit, and the rotational substep of the c subunit. Water molecules are identified in the inlet and outlet half-channels, suggesting that the proton transfer in these two half-channels proceed via a Grotthus mechanism. Clinically relevant mutations are mapped to the structure, showing that they are mainly located at the subunit-subunit interfaces, thus causing instability of the complex.

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Primary Citation of related structures