8H9K image
Deposition Date 2022-10-25
Release Date 2023-05-31
Last Version Date 2025-07-02
Entry Detail
PDB ID:
8H9K
Title:
Human ATP synthase state 2 subregion 2
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
3.51 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATP synthase F(0) complex subunit B1, mitochondrial
Gene (Uniprot):ATP5PB
Chain IDs:A (auth: K)
Chain Length:214
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATP synthase-coupling factor 6, mitochondrial
Gene (Uniprot):ATP5PF
Chain IDs:B (auth: L)
Chain Length:108
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATP synthase subunit d, mitochondrial
Gene (Uniprot):ATP5PD
Chain IDs:C (auth: M)
Chain Length:160
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structure of the human ATP synthase.
Mol.Cell 83 2137 ? (2023)
PMID: 37244256 DOI: 10.1016/j.molcel.2023.04.029

Abstact

Biological energy currency ATP is produced by F1Fo-ATP synthase. However, the molecular mechanism for human ATP synthase action remains unknown. Here, we present snapshot images for three main rotational states and one substate of human ATP synthase using cryoelectron microscopy. These structures reveal that the release of ADP occurs when the β subunit of F1Fo-ATP synthase is in the open conformation, showing how ADP binding is coordinated during synthesis. The accommodation of the symmetry mismatch between F1 and Fo motors is resolved by the torsional flexing of the entire complex, especially the γ subunit, and the rotational substep of the c subunit. Water molecules are identified in the inlet and outlet half-channels, suggesting that the proton transfer in these two half-channels proceed via a Grotthus mechanism. Clinically relevant mutations are mapped to the structure, showing that they are mainly located at the subunit-subunit interfaces, thus causing instability of the complex.

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Primary Citation of related structures