8H89 image
Deposition Date 2022-10-22
Release Date 2022-11-16
Last Version Date 2023-08-30
Entry Detail
PDB ID:
8H89
Keywords:
Title:
Capsid of Ralstonia phage GP4
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Major capsid protein
Chain IDs:A, B, C, D, E, F, G, H, I
Chain Length:369
Number of Molecules:9
Biological Source:Ralstonia phage GP4
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Virion associated protein
Chain IDs:J, K, L, M, N, O, P, Q, R
Chain Length:157
Number of Molecules:9
Biological Source:Ralstonia phage GP4
Ligand Molecules
Primary Citation
A Capsid Structure of Ralstonia solanacearum podoviridae GP4 with a Triangulation Number T = 9.
Viruses 14 ? ? (2022)
PMID: 36366529 DOI: 10.3390/v14112431

Abstact

GP4, a new Ralstonia solanacearum phage, is a short-tailed phage. Few structures of Ralstonia solanacearum phages have been resolved to near-atomic resolution until now. Here, we present a 3.7 Å resolution structure of the GP4 head by cryo-electron microscopy (cryo-EM). The GP4 head contains 540 copies of major capsid protein (MCP) gp2 and 540 copies of cement protein (CP) gp1 arranged in an icosahedral shell with a triangulation number T = 9. The structures of gp2 and gp1 show a canonical HK97-like fold and an Ig-like fold, respectively. The trimeric CPs stick on the surface of the head along the quasi-threefold axis of the icosahedron generating a sandwiched three-layer electrostatic complementary potential, thereby enhancing the head stability. The assembly pattern of the GP4 head provides a platform for the further exploration of the interaction between Ralstonia solanacearum and corresponding phages.

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Primary Citation of related structures
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