8H81 image
Entry Detail
PDB ID:
8H81
Title:
Trans-3/4-proline-hydroxylase H11 with 4-Hydroxyl-proline
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2022-10-21
Release Date:
2023-04-19
Method Details:
Experimental Method:
Resolution:
1.84 Å
R-Value Free:
0.18
R-Value Work:
0.14
R-Value Observed:
0.15
Space Group:
P 41 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Phytanoyl-CoA dioxygenase
Chain IDs:A
Chain Length:266
Number of Molecules:1
Biological Source:uncultured bacterium esnapd13
Ligand Molecules
Primary Citation
Structures of L-proline trans-hydroxylase reveal the catalytic specificity and provide deeper insight into AKG-dependent hydroxylation.
Acta Crystallogr D Struct Biol 79 318 325 (2023)
PMID: 36974966 DOI: 10.1107/S2059798323001936

Abstact

L-Proline hydroxylase is a member of the non-heme Fe2+/α-ketoglutarate (AKG)-dependent hydroxylase family that catalyzes the reaction from L-proline to hydroxy-L-proline, which is widely used in drug synthesis, biochemistry, food supplementation and cosmetic industries. Here, the first crystal structure of L-proline trans-hydroxylase and its complexes with substrate and product are reported, which reveal the structural basis of trans-cis proline hydroxylation selectivity. Structure comparison with other AKG-dependent hydroxylases identifies conserved amino acid residues, which may serve as signatures of in-line or off-line AKG binding modes in the AKG-dependent enzyme family.

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Primary Citation of related structures