8H3T image
Deposition Date 2022-10-09
Release Date 2023-09-13
Last Version Date 2024-02-14
Entry Detail
PDB ID:
8H3T
Keywords:
Title:
The crystal structure of AlpH
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.87 Å
R-Value Free:
0.20
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:AlpH
Chain IDs:A, B
Chain Length:361
Number of Molecules:2
Biological Source:Streptomyces galtieri
Ligand Molecules
Primary Citation
O-methyltransferase-like enzyme catalyzed diazo installation in polyketide biosynthesis.
Nat Commun 14 5372 5372 (2023)
PMID: 37666836 DOI: 10.1038/s41467-023-41062-7

Abstact

Diazo compounds are rare natural products possessing various biological activities. Kinamycin and lomaiviticin, two diazo natural products featured by the diazobenzofluorene core, exhibit exceptional potency as chemotherapeutic agents. Despite the extensive studies on their biosynthetic gene clusters and the assembly of their polyketide scaffolds, the formation of the characteristic diazo group remains elusive. L-Glutamylhydrazine was recently shown to be the hydrazine donor in kinamycin biosynthesis, however, the mechanism for the installation of the hydrazine group onto the kinamycin scaffold is still unclear. Here we describe an O-methyltransferase-like protein, AlpH, which is responsible for the hydrazine incorporation in kinamycin biosynthesis. AlpH catalyses a unique SAM-independent coupling of L-glutamylhydrazine and polyketide intermediate via a rare Mannich reaction in polyketide biosynthesis. Our discovery expands the catalytic diversity of O-methyltransferase-like enzymes and lays a strong foundation for the discovery and development of novel diazo natural products through genome mining and synthetic biology.

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Primary Citation of related structures