8H3R image
Entry Detail
PDB ID:
8H3R
EMDB ID:
Keywords:
Title:
Cryo-EM Structure of the KBTBD2-CRL3~N8 dimeric complex
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2022-10-09
Release Date:
2023-10-11
Method Details:
Experimental Method:
Resolution:
6.36 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Kelch repeat and BTB domain-containing protein 2
Chain IDs:D (auth: A), E (auth: B)
Chain Length:623
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Cullin-3
Chain IDs:C, F
Chain Length:768
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:E3 ubiquitin-protein ligase RBX1
Chain IDs:A (auth: E), B (auth: D)
Chain Length:108
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Dynamic molecular architecture and substrate recruitment of cullin3-RING E3 ligase CRL3 KBTBD2.
Nat.Struct.Mol.Biol. 31 336 350 (2024)
PMID: 38332366 DOI: 10.1038/s41594-023-01182-6

Abstact

Phosphatidylinositol 3-kinase α, a heterodimer of catalytic p110α and one of five regulatory subunits, mediates insulin- and insulin like growth factor-signaling and, frequently, oncogenesis. Cellular levels of the regulatory p85α subunit are tightly controlled by regulated proteasomal degradation. In adipose tissue and growth plates, failure of K48-linked p85α ubiquitination causes diabetes, lipodystrophy and dwarfism in mice, as in humans with SHORT syndrome. Here we elucidated the structures of the key ubiquitin ligase complexes regulating p85α availability. Specificity is provided by the substrate receptor KBTBD2, which recruits p85α to the cullin3-RING E3 ubiquitin ligase (CRL3). CRL3KBTBD2 forms multimers, which disassemble into dimers upon substrate binding (CRL3KBTBD2-p85α) and/or neddylation by the activator NEDD8 (CRL3KBTBD2~N8), leading to p85α ubiquitination and degradation. Deactivation involves dissociation of NEDD8 mediated by the COP9 signalosome and displacement of KBTBD2 by the inhibitor CAND1. The hereby identified structural basis of p85α regulation opens the way to better understanding disturbances of glucose regulation, growth and cancer.

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Primary Citation of related structures