8H00 image
Entry Detail
PDB ID:
8H00
EMDB ID:
Title:
SARS-CoV-2 Omicron BA.1 Spike glycoprotein in complex with rabbit monoclonal antibody 1H1 Fab in the class 1 conformation
Biological Source:
PDB Version:
Deposition Date:
2022-09-27
Release Date:
2023-04-12
Method Details:
Experimental Method:
Resolution:
3.41 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Spike glycoprotein
Mutations:R683S, R685S, F817P, A892P, A899P, A942P, K986P, V987P
Chain IDs:A, B, C
Chain Length:1286
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2
Polymer Type:polypeptide(L)
Description:rabbit monoclonal antibody 1H1 Fab light chain
Chain IDs:D, F, H
Chain Length:111
Number of Molecules:3
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:rabbit monoclonal antibody 1H1 Fab heavy chain
Chain IDs:E, G, I
Chain Length:122
Number of Molecules:3
Biological Source:Oryctolagus cuniculus
Ligand Molecules
Primary Citation
Mechanism of a rabbit monoclonal antibody broadly neutralizing SARS-CoV-2 variants.
Commun Biol 6 364 364 (2023)
PMID: 37012333 DOI: 10.1038/s42003-023-04759-5

Abstact

Due to the continuous evolution of SARS-CoV-2, the Omicron variant has emerged and exhibits severe immune evasion. The high number of mutations at key antigenic sites on the spike protein has made a large number of existing antibodies and vaccines ineffective against this variant. Therefore, it is urgent to develop efficient broad-spectrum neutralizing therapeutic drugs. Here we characterize a rabbit monoclonal antibody (RmAb) 1H1 with broad-spectrum neutralizing potency against Omicron sublineages including BA.1, BA.1.1, BA.2, BA.2.12.1, BA.2.75, BA.3 and BA.4/5. Cryo-electron microscopy (cryo-EM) structure determination of the BA.1 spike-1H1 Fab complexes shows that 1H1 targets a highly conserved region of RBD and avoids most of the circulating Omicron mutations, explaining its broad-spectrum neutralization potency. Our findings indicate 1H1 as a promising RmAb model for designing broad-spectrum neutralizing antibodies and shed light on the development of therapeutic agents as well as effective vaccines against newly emerging variants in the future.

Legend

Protein

Chemical

Disease

Primary Citation of related structures