8GZN image
Deposition Date 2022-09-27
Release Date 2023-10-25
Last Version Date 2025-07-02
Entry Detail
PDB ID:
8GZN
Title:
IgM-var2CSA complex
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Immunoglobulin heavy constant mu
Gene (Uniprot):IGHM
Chain IDs:A, B, C, D, E, F, G, H, K, L
Chain Length:453
Number of Molecules:10
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Erythrocyte membrane protein 1
Chain IDs:I, M
Chain Length:2680
Number of Molecules:2
Biological Source:Plasmodium falciparum
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Immunoglobulin J chain
Gene (Uniprot):JCHAIN
Chain IDs:J
Chain Length:136
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Cryo-electron microscopy of IgM-VAR2CSA complex reveals IgM inhibits binding of Plasmodium falciparum to Chondroitin Sulfate A.
Nat Commun 14 6391 6391 (2023)
PMID: 37828011 DOI: 10.1038/s41467-023-41838-x

Abstact

Placental malaria is caused by Plasmodium falciparum-infected erythrocytes (IEs) adhering to chondroitin sulfate proteoglycans in placenta via VAR2CSA-type PfEMP1. Human pentameric immunoglobulin M (IgM) binds to several types of PfEMP1, including VAR2CSA via its Fc domain. Here, a 3.6 Å cryo-electron microscopy map of the IgM-VAR2CSA complex reveals that two molecules of VAR2CSA bind to the Cµ4 of IgM through their DBL3X and DBL5ε domains. The clockwise and anti-clockwise rotation of the two VAR2CSA molecules on opposite faces of IgM juxtaposes C-termini of both VAR2CSA near the J chain, where IgM creates a wall between both VAR2CSA molecules and hinders its interaction with its receptor. To support this, we show when VAR2CSA is bound to IgM, its staining on IEs as well as binding of IEs to chondroitin sulfate A in vitro is severely compromised.

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Protein

Chemical

Disease

Primary Citation of related structures