8GYR image
Deposition Date 2022-09-23
Release Date 2023-06-28
Last Version Date 2024-02-07
Entry Detail
PDB ID:
8GYR
Keywords:
Title:
Crystal structure of a variable region segment of Leptospira host-interacting outer surface protein, LigA
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.87 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Leptospira Immunoglobulin-like protein
Gene (Uniprot):ligA
Chain IDs:A
Chain Length:182
Number of Molecules:1
Biological Source:Leptospira interrogans
Polymer Type:polypeptide(L)
Molecule:LigA
Gene (Uniprot):ligA
Chain IDs:B
Chain Length:183
Number of Molecules:1
Biological Source:Leptospira interrogans
Primary Citation
Crystal structure of a variable region segment of Leptospira host-interacting outer surface protein, LigA, reveals the orientation of Ig-like domains.
Int.J.Biol.Macromol. 244 125445 125445 (2023)
PMID: 37336372 DOI: 10.1016/j.ijbiomac.2023.125445

Abstact

Leptospiral immunoglobulin-like (Lig) protein family is a surface-exposed protein from the pathogenic Leptospira. The Lig protein family has been identified as an essential virulence factor of L. interrogan. One of the family members, LigA, contains 13 homologous tandem repeats of bacterial Ig-like (Big) domains in its extracellular portion. It is crucial in binding with the host's Extracellular matrices (ECM) and complement factors. However, its vital role in the invasion and evasion of pathogenic Leptospira, structural details, and domain organization of the extracellular portion of this protein are not explored thoroughly. Here, we described the first high-resolution crystal structure of a variable region segment (LigA8-9) of LigA at 1.87 Å resolution. The structure showed some remarkably distinctive aspects compared with other closely related Immunoglobulin domains. The structure illustrated the relative orientation of two domains and highlighted the role of the linker region in the domain orientation. We also observed an apparent electron density of Ca2+ ions coordinated with a proper interacting geometry within the protein. Molecular dynamic simulations demonstrated the involvement of a linker salt bridge in providing rigidity between the two domains. Our study proposes an overall arrangement of Ig-like domains in the LigA protein. The structural understanding of the extracellular portion of LigA and its interaction with the ECM provides insight into developing new therapeutics directed toward leptospirosis.

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