8GYD image
Deposition Date 2022-09-22
Release Date 2023-08-23
Last Version Date 2023-09-13
Entry Detail
PDB ID:
8GYD
Keywords:
Title:
Structure of Schistosoma japonicum Glutathione S-transferase bound with the ligand complex of 16
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.21
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 65
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glutathione S-transferase class-mu 26 kDa isozyme
Chain IDs:A, B
Chain Length:232
Number of Molecules:2
Biological Source:Schistosoma japonicum
Primary Citation
Discovery, SAR Study of GST Inhibitors from a Novel Quinazolin-4(1 H )-one Focused DNA-Encoded Library.
J.Med.Chem. 66 11118 11132 (2023)
PMID: 37552553 DOI: 10.1021/acs.jmedchem.2c02129

Abstact

The DNA-encoded library (DEL) is a powerful hit-generation tool in drug discovery. This study describes a new DEL with a privileged scaffold quinazolin-4(3H)-one developed by a robust DNA-compatible multicomponent reaction and a series of novel glutathione S-transferase (GST) inhibitors that were identified through affinity-mediated DEL selection. A novel inhibitor 16 was subsequently verified with an inhibitory potency value of 1.55 ± 0.02 μM against SjGST and 2.02 ± 0.20 μM against hGSTM2. Further optimization was carried out via various structure-activity relationship studies. And especially, the co-crystal structure of the compound 16 with the SjGST was unveiled, which clearly demonstrated its binding mode was quite different from the known GSH-like compounds. This new type of probe is likely to play a different role compared with the GSH, which may provide new opportunities to discover more potent GST inhibitors.

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Primary Citation of related structures