8GSV image
Deposition Date 2022-09-07
Release Date 2023-05-10
Last Version Date 2023-11-29
Entry Detail
PDB ID:
8GSV
Keywords:
Title:
Crystal structure of human BAK in complex with the Pxt1 BH3 domain
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Bcl-2 homologous antagonist/killer
Gene (Uniprot):BAK1
Mutations:C166S
Chain IDs:A, C, E, G, I, K, M, O, Q, S, U, W
Chain Length:166
Number of Molecules:12
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Peroxisomal testis-specific protein 1
Gene (Uniprot):PXT1
Chain IDs:B, D, F, H, J, L, N, P, R, T, V, X
Chain Length:29
Number of Molecules:12
Biological Source:Homo sapiens
Primary Citation
Structural basis for proapoptotic activation of Bak by the noncanonical BH3-only protein Pxt1.
Plos Biol. 21 e3002156 e3002156 (2023)
PMID: 37315086 DOI: 10.1371/journal.pbio.3002156

Abstact

Bak is a critical executor of apoptosis belonging to the Bcl-2 protein family. Bak contains a hydrophobic groove where the BH3 domain of proapoptotic Bcl-2 family members can be accommodated, which initiates its activation. Once activated, Bak undergoes a conformational change to oligomerize, which leads to mitochondrial destabilization and the release of cytochrome c into the cytosol and eventual apoptotic cell death. In this study, we investigated the molecular aspects and functional consequences of the interaction between Bak and peroxisomal testis-specific 1 (Pxt1), a noncanonical BH3-only protein exclusively expressed in the testis. Together with various biochemical approaches, this interaction was verified and analyzed at the atomic level by determining the crystal structure of the Bak-Pxt1 BH3 complex. In-depth biochemical and cellular analyses demonstrated that Pxt1 functions as a Bak-activating proapoptotic factor, and its BH3 domain, which mediates direct intermolecular interaction with Bak, plays a critical role in triggering apoptosis. Therefore, this study provides a molecular basis for the Pxt1-mediated novel pathway for the activation of apoptosis and expands our understanding of the cell death signaling coordinated by diverse BH3 domain-containing proteins.

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